Information for 6-TAACAATTCW (Motif 6)

A G C T C G T A C T G A G T A C C G T A C G T A A C G T A C G T A G T C C G T A
Reverse Opposite:
C G A T A C T G G T C A C G T A A C G T A C G T A C T G A G C T A C G T C T G A
p-value:1e-5
log p-value:-1.270e+01
Information Content per bp:1.874
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif28.57%
Number of Background Sequences with motif2964.9
Percentage of Background Sequences with motif6.77%
Average Position of motif in Targets489.6 +/- 251.8bp
Average Position of motif in Background456.2 +/- 385.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0165.1_Sox11_2/Jaspar

Match Rank:1
Score:0.80
Offset:-4
Orientation:reverse strand
Alignment:----TAACAATTCW
NNCNNAACAATTNT
 A C G T A C G T A C G T A C G T A G C T C G T A C T G A G T A C C G T A C G T A A C G T A C G T A G T C C G T A
G C A T G A C T A G T C G T C A C G A T C T G A C G T A A G T C C G T A T C G A A G C T G A C T G A C T G C A T

PB0175.1_Sox4_2/Jaspar

Match Rank:2
Score:0.79
Offset:-4
Orientation:reverse strand
Alignment:----TAACAATTCW---
TNCNNAACAATTTTTNC
 A C G T A C G T A C G T A C G T A G C T C G T A C T G A G T A C C G T A C G T A A C G T A C G T A G T C C G T A A C G T A C G T A C G T
G A C T G A C T G A T C A T G C G A C T C T G A C G T A A G T C C G T A C T G A G A C T G A C T G A C T G A C T C G A T A G T C A T G C

Sox5/MA0087.1/Jaspar

Match Rank:3
Score:0.79
Offset:0
Orientation:reverse strand
Alignment:TAACAATTCW
NAACAAT---
 A G C T C G T A C T G A G T A C C G T A C G T A A C G T A C G T A G T C C G T A
G C A T C G T A C T G A A G T C C G T A G T C A A C G T A C G T A C G T A C G T

PB0066.1_Sox17_1/Jaspar

Match Rank:4
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--TAACAATTCW---
ATAAACAATTAAACA
 A C G T A C G T A G C T C G T A C T G A G T A C C G T A C G T A A C G T A C G T A G T C C G T A A C G T A C G T A C G T
T G C A C G A T C T G A C G T A C G T A A G T C C G T A C G T A C G A T C G A T T C G A G C T A G C A T G A T C C G T A

PB0067.1_Sox18_1/Jaspar

Match Rank:5
Score:0.75
Offset:-5
Orientation:reverse strand
Alignment:-----TAACAATTCW-
NNTNANAACAATTNNA
 A C G T A C G T A C G T A C G T A C G T A G C T C G T A C T G A G T A C C G T A C G T A A C G T A C G T A G T C C G T A A C G T
C G A T C A G T G C A T C A G T C G T A T C A G C G T A G C T A A G T C G C T A C G T A C G A T C A G T T C A G C G T A T C G A

MF0011.1_HMG_class/Jaspar

Match Rank:6
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:TAACAATTCW
-AACAAT---
 A G C T C G T A C T G A G T A C C G T A C G T A A C G T A C G T A G T C C G T A
A C G T T C G A C G T A G A T C C T G A T G C A C G A T A C G T A C G T A C G T

PB0172.1_Sox1_2/Jaspar

Match Rank:7
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---TAACAATTCW--
NNNTAACAATTATAN
 A C G T A C G T A C G T A G C T C G T A C T G A G T A C C G T A C G T A A C G T A C G T A G T C C G T A A C G T A C G T
A T G C T C A G G T A C A C G T T G C A T G C A A T G C C T G A C T G A G A C T C G A T C T G A G A C T C T G A C A T G

PB0074.1_Sox8_1/Jaspar

Match Rank:8
Score:0.73
Offset:-4
Orientation:reverse strand
Alignment:----TAACAATTCW---
TNNAGAACAATANATNN
 A C G T A C G T A C G T A C G T A G C T C G T A C T G A G T A C C G T A C G T A A C G T A C G T A G T C C G T A A C G T A C G T A C G T
G C A T G C T A G T C A C G T A C A T G C T G A C G T A A G T C C G T A C T G A C G A T C G T A T C A G G C T A G C A T G T C A G T A C

SRY/MA0084.1/Jaspar

Match Rank:9
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--TAACAATTCW
GTAAACAAT---
 A C G T A C G T A G C T C G T A C T G A G T A C C G T A C G T A A C G T A C G T A G T C C G T A
A C T G C G A T C G T A C G T A C G T A A G T C C G T A C T G A C G A T A C G T A C G T A C G T

PB0068.1_Sox1_1/Jaspar

Match Rank:10
Score:0.71
Offset:0
Orientation:forward strand
Alignment:TAACAATTCW------
AATCAATTCAATAATT
 A G C T C G T A C T G A G T A C C G T A C G T A A C G T A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
G C A T C G T A C A G T G A T C G C T A G C T A G C A T C G A T T A G C G C T A G C T A G C A T C G T A G T C A C G A T A C G T