Information for 5-CGGAGGCTTA (Motif 5)

A G T C A C T G A C T G C G T A A C T G A C T G A G T C A C G T A C G T C G T A
Reverse Opposite:
A C G T C G T A C G T A A C T G A G T C A G T C A C G T A G T C A G T C A C T G
p-value:1e-5
log p-value:-1.359e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif6.12%
Number of Background Sequences with motif16.7
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets452.0 +/- 181.5bp
Average Position of motif in Background617.8 +/- 238.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Crx/MA0467.1/Jaspar

Match Rank:1
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CGGAGGCTTA-
AAGAGGATTAG
 A G T C A C T G A C T G C G T A A C T G A C T G A G T C A C G T A C G T C G T A A C G T
T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:2
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CGGAGGCTTA
--NGGGATTA
 A G T C A C T G A C T G C G T A A C T G A C T G A G T C A C G T A C G T C G T A
A C G T A C G T T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:3
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CGGAGGCTTA--
--VRGGATTARN
 A G T C A C T G A C T G C G T A A C T G A C T G A G T C A C G T A C G T C G T A A C G T A C G T
A C G T A C G T T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:4
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:CGGAGGCTTA--
----GGATTAGC
 A G T C A C T G A C T G C G T A A C T G A C T G A G T C A C G T A C G T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C

PH0139.1_Pitx3/Jaspar

Match Rank:5
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CGGAGGCTTA------
AGGGGGATTAGCTGCC
 A G T C A C T G A C T G C G T A A C T G A C T G A G T C A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
T C G A C T A G T A C G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C A T G A T G C A C G T C T A G A T G C A T G C

PITX3/MA0714.1/Jaspar

Match Rank:6
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CGGAGGCTTA--
---GGGATTANN
 A G T C A C T G A C T G C G T A A C T G A C T G A G T C A C G T A C G T C G T A A C G T A C G T
A C G T A C G T A C G T C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G

PITX1/MA0682.2/Jaspar

Match Rank:7
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CGGAGGCTTA-
---NGGATTAN
 A G T C A C T G A C T G C G T A A C T G A C T G A G T C A C G T A C G T C G T A A C G T
A C G T A C G T A C G T C A T G T C A G C A T G G T C A A C G T A C G T C G T A C T A G

RHOXF1/MA0719.1/Jaspar

Match Rank:8
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CGGAGGCTTA-
---NGGATTAN
 A G T C A C T G A C T G C G T A A C T G A C T G A G T C A C G T A C G T C G T A A C G T
A C G T A C G T A C G T C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T

ZNF460/MA1596.1/Jaspar

Match Rank:9
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CGGAGGCTTA---
CTCGGGAGGCTGAGGC
 A C G T A C G T A C G T A G T C A C T G A C T G C G T A A C T G A C T G A G T C A C G T A C G T C G T A A C G T A C G T A C G T
A G T C A G C T A G T C T C A G T A C G T A C G G T C A T A C G T C A G G A T C A C G T T A C G T C G A T A C G T A C G A G T C

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.60
Offset:3
Orientation:forward strand
Alignment:CGGAGGCTTA-
---AGGCCTNG
 A G T C A C T G A C T G C G T A A C T G A C T G A G T C A C G T A C G T C G T A A C G T
A C G T A C G T A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G