Information for 3-GAGCAGCSCC (Motif 3)

A C T G G T C A A C T G A G T C C G T A A T C G T G A C A T C G A T G C A G T C
Reverse Opposite:
A C T G A T C G A T G C A C T G A T G C C G A T A C T G A G T C A C G T A G T C
p-value:1e-6
log p-value:-1.450e+01
Information Content per bp:1.868
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif24.49%
Number of Background Sequences with motif1790.3
Percentage of Background Sequences with motif4.09%
Average Position of motif in Targets668.1 +/- 272.4bp
Average Position of motif in Background641.9 +/- 340.7bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF341/MA1655.1/Jaspar

Match Rank:1
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GAGCAGCSCC
GGGAACAGCCAC
 A C G T A C G T A C T G G T C A A C T G A G T C C G T A A T C G T G A C A T C G A T G C A G T C
C A T G C T A G T A C G T G C A C T G A A T G C T C G A A T C G A T G C G T A C T C G A T A G C

PB0199.1_Zfp161_2/Jaspar

Match Rank:2
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GAGCAGCSCC-
GCCGCGCAGTGCGT
 A C G T A C G T A C G T A C T G G T C A A C T G A G T C C G T A A T C G T G A C A T C G A T G C A G T C A C G T
C A T G G A T C A G T C T A C G G A T C C T A G T G A C G T C A C T A G A C G T C T A G G T A C T C A G A G C T

ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer

Match Rank:3
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GAGCAGCSCC
GGAACAGCCG-
 A C G T A C T G G T C A A C T G A G T C C G T A A T C G T G A C A T C G A T G C A G T C
C T A G A C T G T G C A G T C A A T G C C G T A A T C G A T G C A G T C C T A G A C G T

NHLH1/MA0048.2/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GAGCAGCSCC-
-CGCAGCTGCG
 A C T G G T C A A C T G A G T C C G T A A T C G T G A C A T C G A T G C A G T C A C G T
A C G T T G A C T C A G G T A C T G C A A T C G T A G C A C G T T A C G G A T C A C T G

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.61
Offset:3
Orientation:forward strand
Alignment:GAGCAGCSCC
---CAGCC--
 A C T G G T C A A C T G A G T C C G T A A T C G T G A C A T C G A T G C A G T C
A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T

Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer

Match Rank:6
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GAGCAGCSCC-
SSRGCAGCTGCH
 A C G T A C T G G T C A A C T G A G T C C G T A A T C G T G A C A T C G A T G C A G T C A C G T
T A C G T A C G C T A G T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G T C G A C T

Ascl2/MA0816.1/Jaspar

Match Rank:7
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GAGCAGCSCC-
-AGCAGCTGCT
 A C T G G T C A A C T G A G T C C G T A A T C G T G A C A T C G A T G C A G T C A C G T
A C G T T C G A T C A G G T A C C G T A A T C G T G A C C G A T A C T G A G T C G A C T

ZNF682/MA1599.1/Jaspar

Match Rank:8
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---GAGCAGCSCC---
CGGGCCAAGCCCCTAT
 A C G T A C G T A C G T A C T G G T C A A C T G A G T C C G T A A T C G T G A C A T C G A T G C A G T C A C G T A C G T A C G T
A G T C T C A G C T A G T C A G T A G C A G T C T G C A T G C A A C T G A G T C A G T C A T G C G T A C C G A T T C G A A G C T

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GAGCAGCSCC
GGGAGGACNG--
 A C G T A C G T A C T G G T C A A C T G A G T C C G T A A T C G T G A C A T C G A T G C A G T C
C T A G A C T G A C T G C G T A A C T G A T C G C G T A A T G C A G C T T A C G A C G T A C G T

NRF1/MA0506.1/Jaspar

Match Rank:10
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GAGCAGCSCC
TGCGCAGGCGC
 A C G T A C T G G T C A A C T G A G T C C G T A A T C G T G A C A T C G A T G C A G T C
A G C T A C T G A T G C C T A G A G T C T G C A A C T G T A C G A G T C A C T G A G T C