Information for 1-TTTAACAGCC (Motif 1)

C G A T C A G T G C A T C G T A C T G A T G A C C T G A T A C G T A G C G A T C
Reverse Opposite:
C T A G A T C G A T G C G A C T A C T G G A C T G C A T C G T A G T C A G C T A
p-value:1e-10
log p-value:-2.390e+01
Information Content per bp:1.671
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif38.78%
Number of Background Sequences with motif2733.5
Percentage of Background Sequences with motif6.25%
Average Position of motif in Targets542.3 +/- 276.9bp
Average Position of motif in Background511.6 +/- 341.2bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rhox11/MA0629.1/Jaspar

Match Rank:1
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---TTTAACAGCC----
TCNNTTTACAGCGNNNT
 A C G T A C G T A C G T C G A T C A G T G C A T C G T A C T G A T G A C C T G A T A C G T A G C G A T C A C G T A C G T A C G T A C G T
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T

PH0157.1_Rhox11_1/Jaspar

Match Rank:2
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---TTTAACAGCC----
TCNNTTTACAGCGNNNT
 A C G T A C G T A C G T C G A T C A G T G C A T C G T A C T G A T G A C C T G A T A C G T A G C G A T C A C G T A C G T A C G T A C G T
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T

PH0158.1_Rhox11_2/Jaspar

Match Rank:3
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---TTTAACAGCC----
TCNCTTTACAGCGNNNT
 A C G T A C G T A C G T C G A T C A G T G C A T C G T A C T G A T G A C C T G A T A C G T A G C G A T C A C G T A C G T A C G T A C G T
C G A T A G T C A T G C G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G G A T C C T A G C A G T G T A C A G T C C G A T

ZNF341/MA1655.1/Jaspar

Match Rank:4
Score:0.68
Offset:0
Orientation:forward strand
Alignment:TTTAACAGCC--
GGGAACAGCCAC
 C G A T C A G T G C A T C G T A C T G A T G A C C T G A T A C G T A G C G A T C A C G T A C G T
C A T G C T A G T A C G T G C A C T G A A T G C T C G A A T C G A T G C G T A C T C G A T A G C

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:5
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:TTTAACAGCC
TTTAATTGCN
 C G A T C A G T G C A T C G T A C T G A T G A C C T G A T A C G T A G C G A T C
C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C

MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer

Match Rank:6
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:TTTAACAGCC
--YAACBGCC
 C G A T C A G T G C A T C G T A C T G A T G A C C T G A T A C G T A G C G A T C
A C G T A C G T A G C T C G T A C G T A A G T C A G T C A C T G G A T C G A T C

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:7
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:TTTAACAGCC-
-TTMACACCTT
 C G A T C A G T G C A T C G T A C T G A T G A C C T G A T A C G T A G C G A T C A C G T
A C G T C A G T G A C T G T A C C T G A A T G C T C G A T A G C G T A C G A C T G A C T

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:8
Score:0.66
Offset:0
Orientation:forward strand
Alignment:TTTAACAGCC
ATTAACACCT
 C G A T C A G T G C A T C G T A C T G A T G A C C T G A T A C G T A G C G A T C
G C T A G A C T G A C T T G C A C G T A A G T C C G T A T A G C G A T C G A C T

PB0109.1_Bbx_2/Jaspar

Match Rank:9
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----TTTAACAGCC--
TGATTGTTAACAGTTGG
 A C G T A C G T A C G T A C G T A C G T C G A T C A G T G C A T C G T A C T G A T G A C C T G A T A C G T A G C G A T C A C G T A C G T
G A C T T C A G G C T A G A C T A C G T C A T G C A G T A G C T T C G A G T C A G T A C T C G A A T C G G C A T A C G T C T A G T C A G

MYBL2/MA0777.1/Jaspar

Match Rank:10
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----TTTAACAGCC
GACNGTTTAACGGTT
 A C G T A C G T A C G T A C G T A C G T C G A T C A G T G C A T C G T A C T G A T G A C C T G A T A C G T A G C G A T C
C T A G C T G A T A G C T A G C A C T G C G A T A C G T G C A T C T G A G T C A G A T C A T C G A C T G G A C T G A C T