Information for 4-GTCTGTCACT (Motif 4)

A T C G A G C T A G T C C G A T A C T G A C G T A T G C C G T A A G T C A C G T
Reverse Opposite:
T G C A A C T G C G A T A T C G T C G A A G T C C G T A C T A G C T G A A T G C
p-value:1e-5
log p-value:-1.334e+01
Information Content per bp:1.843
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif18.00%
Number of Background Sequences with motif981.1
Percentage of Background Sequences with motif2.24%
Average Position of motif in Targets433.1 +/- 282.0bp
Average Position of motif in Background517.7 +/- 296.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.56
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.88
Offset:-1
Orientation:reverse strand
Alignment:-GTCTGTCACT-
TGTCTGDCACCT
 A C G T A T C G A G C T A G T C C G A T A C T G A C G T A T G C C G T A A G T C A C G T A C G T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.83
Offset:-2
Orientation:forward strand
Alignment:--GTCTGTCACT-
CTGTCTGTCACCT
 A C G T A C G T A T C G A G C T A G T C C G A T A C T G A C G T A T G C C G T A A G T C A C G T A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

PBX3/MA1114.1/Jaspar

Match Rank:3
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--GTCTGTCACT-----
NNNCCTGTCACTCANNN
 A C G T A C G T A T C G A G C T A G T C C G A T A C T G A C G T A T G C C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
T A G C A G T C T A C G A T G C T G A C G A C T A T C G G A C T A T G C G T C A T G A C G C A T A G T C G C T A T G A C T G A C A T G C

PKNOX1/MA0782.2/Jaspar

Match Rank:4
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-GTCTGTCACT----
NNGCTGTCACTCANN
 A C G T A T C G A G C T A G T C C G A T A C T G A C G T A T G C C G T A A G T C A C G T A C G T A C G T A C G T A C G T
G A C T T C G A A T C G T G A C G C A T C T A G G A C T T A G C G C T A T G A C G A C T A G T C G C T A C G T A G C T A

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:5
Score:0.75
Offset:0
Orientation:forward strand
Alignment:GTCTGTCACT--
GSCTGTCACTCA
 A T C G A G C T A G T C C G A T A C T G A C G T A T G C C G T A A G T C A C G T A C G T A C G T
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:6
Score:0.73
Offset:0
Orientation:forward strand
Alignment:GTCTGTCACT
VGCTGWCAVB
 A T C G A G C T A G T C C G A T A C T G A C G T A T G C C G T A A G T C A C G T
T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C

MEIS3/MA0775.1/Jaspar

Match Rank:7
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:GTCTGTCACT
-CCTGTCAA-
 A T C G A G C T A G T C C G A T A C T G A C G T A T G C C G T A A G T C A C G T
A C G T T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:8
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:GTCTGTCACT
--NTGTCAN-
 A T C G A G C T A G T C C G A T A C T G A C G T A T G C C G T A A G T C A C G T
A C G T A C G T G A T C G A C T C T A G A C G T A T G C C G T A C G T A A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:9
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:GTCTGTCACT
-GCTGTCAA-
 A T C G A G C T A G T C C G A T A C T G A C G T A T G C C G T A A G T C A C G T
A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T

PH0141.1_Pknox2/Jaspar

Match Rank:10
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----GTCTGTCACT--
AAGCACCTGTCAATAT
 A C G T A C G T A C G T A C G T A T C G A G C T A G T C C G A T A C T G A C G T A T G C C G T A A G T C A C G T A C G T A C G T
G C T A C T G A T C A G A T G C T C G A T A G C G T A C A G C T A C T G G A C T A G T C C T G A G T C A G C A T G C T A A G C T