Information for 5-CTAGGTCTGC (Motif 5)

A G T C A C G T C G T A A C T G A C T G A C G T A G T C A C G T A C T G A G T C
Reverse Opposite:
A C T G A G T C C G T A A C T G C G T A A G T C A G T C A C G T C G T A A C T G
p-value:1e-5
log p-value:-1.201e+01
Information Content per bp:1.530
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif24.49%
Number of Background Sequences with motif2312.0
Percentage of Background Sequences with motif5.20%
Average Position of motif in Targets489.3 +/- 261.3bp
Average Position of motif in Background492.3 +/- 353.8bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:1
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CTAGGTCTGC
CTAGGCCT--
 A G T C A C G T C G T A A C T G A C T G A C G T A G T C A C G T A C T G A G T C
T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T A C G T A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CTAGGTCTGC
CNAGGCCT--
 A G T C A C G T C G T A A C T G A C T G A C G T A G T C A C G T A C T G A G T C
A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T A C G T

HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer

Match Rank:3
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CTAGGTCTGC
TWVGGTCCGC
 A G T C A C G T C G T A A C T G A C T G A C G T A G T C A C G T A C T G A G T C
A G C T C G A T T A C G A T C G A T C G C A G T A G T C A G T C A C T G T A G C

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CTAGGTCTGC
VBSYGTCTGG
 A G T C A C G T C G T A A C T G A C T G A C G T A G T C A C G T A C T G A G T C
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

RORA(var.2)/MA0072.1/Jaspar

Match Rank:5
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----CTAGGTCTGC
TATAAGTAGGTCAA-
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T C G T A A C T G A C T G A C G T A G T C A C G T A C T G A G T C
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A A C G T

Zfx/MA0146.2/Jaspar

Match Rank:6
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----CTAGGTCTGC
GGGGCCGAGGCCTG-
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T C G T A A C T G A C T G A C G T A G T C A C G T A C T G A G T C
A T C G A T C G T A C G C T A G A T G C G A T C A C T G T G C A T C A G A T C G A G T C A G T C A G C T T A C G A C G T

HINFP/MA0131.2/Jaspar

Match Rank:7
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CTAGGTCTGC--
CAACGTCCGCGG
 A G T C A C G T C G T A A C T G A C T G A C G T A G T C A C G T A C T G A G T C A C G T A C G T
A T G C T G C A T C G A A T G C A T C G A C G T A T G C A G T C A T C G A T G C C A T G A C T G

RORA/MA0071.1/Jaspar

Match Rank:8
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CTAGGTCTGC
ATCAAGGTCA--
 A C G T A C G T A G T C A C G T C G T A A C T G A C T G A C G T A G T C A C G T A C T G A G T C
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:9
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CTAGGTCTGC
AAYTAGGTCA--
 A C G T A C G T A G T C A C G T C G T A A C T G A C T G A C G T A G T C A C G T A C T G A G T C
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:10
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CTAGGTCTGC
AAYTAGGTCA--
 A C G T A C G T A G T C A C G T C G T A A C T G A C T G A C G T A G T C A C G T A C T G A G T C
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T A C G T