Information for 4-CCAGACGACT (Motif 4)

A T G C A G T C C G T A A C T G C T G A A T G C A C T G C G T A A G T C A C G T
Reverse Opposite:
C G T A A C T G G C A T A G T C A T C G A G C T A G T C A C G T A C T G A T C G
p-value:1e-5
log p-value:-1.337e+01
Information Content per bp:1.874
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif14.29%
Number of Background Sequences with motif511.4
Percentage of Background Sequences with motif1.15%
Average Position of motif in Targets435.1 +/- 291.9bp
Average Position of motif in Background558.3 +/- 383.2bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.29
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:CCAGACGACT
CCAGACRSVB
 A T G C A G T C C G T A A C T G C T G A A T G C A C T G C G T A A G T C A C G T
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:CCAGACGACT
CCAGACAG--
 A T G C A G T C C G T A A C T G C T G A A T G C A C T G C G T A A G T C A C G T
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:3
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---CCAGACGACT
ATGCCAGACN---
 A C G T A C G T A C G T A T G C A G T C C G T A A C T G C T G A A T G C A C T G C G T A A G T C A C G T
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.70
Offset:-5
Orientation:forward strand
Alignment:-----CCAGACGACT--
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A A C T G C T G A A T G C A C T G C G T A A G T C A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

PROX1/MA0794.1/Jaspar

Match Rank:5
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CCAGACGACT--
CAAGACGCCTTA
 A T G C A G T C C G T A A C T G C T G A A T G C A C T G C G T A A G T C A C G T A C G T A C G T
A G T C C T G A G C T A C T A G T C G A G A T C C A T G G A T C A G T C C A G T A G C T T C G A

HAND2/MA1638.1/Jaspar

Match Rank:6
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CCAGACGACT
ACCAGATGGC-
 A C G T A T G C A G T C C G T A A C T G C T G A A T G C A C T G C G T A A G T C A C G T
C T G A T G A C A T G C T C G A A C T G T C G A A G C T T C A G A C T G G A T C A C G T

Smad4/MA1153.1/Jaspar

Match Rank:7
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CCAGACGACT
TCTAGACA---
 A C G T A T G C A G T C C G T A A C T G C T G A A T G C A C T G C G T A A G T C A C G T
A C G T A G T C A G C T C G T A A C T G C G T A A G T C C T G A A C G T A C G T A C G T

TWIST1/MA1123.2/Jaspar

Match Rank:8
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CCAGACGACT
ATTCCAGATGTTT
 A C G T A C G T A C G T A T G C A G T C C G T A A C T G C T G A A T G C A C T G C G T A A G T C A C G T
C G T A C G A T C G A T T G A C G T A C C G T A A C T G T G C A G A C T A C T G A C G T A G C T G C A T

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:9
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----CCAGACGACT---
AAGGCCAGATGGTCCGG
 A C G T A C G T A C G T A C G T A T G C A G T C C G T A A C T G C T G A A T G C A C T G C G T A A G T C A C G T A C G T A C G T A C G T
G C T A T C G A C T A G C A T G T A G C G T A C C T G A A C T G T C G A C G A T A C T G C A T G A G C T G A T C A T G C A T C G T C A G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:10
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CCAGACGACT
BCAGACWA--
 A T G C A G T C C G T A A C T G C T G A A T G C A C T G C G T A A G T C A C G T
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T