Information for 1-CTCTCAGATT (Motif 1)

A T G C A C G T A G T C A C G T T G A C G T C A C A T G C G T A G C A T A G C T
Reverse Opposite:
C T G A C G T A A C G T G T A C A C G T A C T G C G T A C T A G C G T A A T C G
p-value:1e-10
log p-value:-2.406e+01
Information Content per bp:1.842
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif24.49%
Number of Background Sequences with motif761.4
Percentage of Background Sequences with motif1.71%
Average Position of motif in Targets470.7 +/- 236.2bp
Average Position of motif in Background472.1 +/- 307.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SIX1/MA1118.1/Jaspar

Match Rank:1
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CTCTCAGATT--
-TATCAGGTTAC
 A T G C A C G T A G T C A C G T T G A C G T C A C A T G C G T A G C A T A G C T A C G T A C G T
A C G T C A G T T G C A G C A T G A T C C G T A C A T G C T A G G C A T C G A T G C T A G T A C

Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer

Match Rank:2
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CTCTCAGATT---
VGGTVTCAGRTTWCA
 A C G T A C G T A T G C A C G T A G T C A C G T T G A C G T C A C A T G C G T A G C A T A G C T A C G T A C G T A C G T
T A G C T C A G T C A G C A G T T C A G A C G T A G T C T C G A C T A G C T A G A C G T A C G T C G A T G T A C G T C A

PB0138.1_Irf4_2/Jaspar

Match Rank:3
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----CTCTCAGATT-
AGTATTCTCGGTTGC
 A C G T A C G T A C G T A C G T A T G C A C G T A G T C A C G T T G A C G T C A C A T G C G T A G C A T A G C T A C G T
T C A G T A C G A G C T G C T A G A C T C A G T G A T C A G C T G A T C T C A G T C A G C G A T G A C T C A T G A T G C

ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer

Match Rank:4
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CTCTCAGATT
VCCTCTCTGDDY
 A C G T A C G T A T G C A C G T A G T C A C G T T G A C G T C A C A T G C G T A G C A T A G C T
T G A C T A G C G T A C G C A T A G T C A C G T A T G C C G A T T A C G C G A T C A G T A G T C

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:5
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CTCTCAGATT--
GKVTCADRTTWC
 A T G C A C G T A G T C A C G T T G A C G T C A C A T G C G T A G C A T A G C T A C G T A C G T
C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:6
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CTCTCAGATT
AGCCACTCAAG--
 A C G T A C G T A C G T A T G C A C G T A G T C A C G T T G A C G T C A C A T G C G T A G C A T A G C T
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T A C G T

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:7
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CTCTCAGATT--
GKMTCADRTTWC
 A T G C A C G T A G T C A C G T T G A C G T C A C A T G C G T A G C A T A G C T A C G T A C G T
C T A G C A G T T G C A A C G T G A T C T C G A C T A G T C A G A C G T C A G T G C A T G A T C

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:8
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CTCTCAGATT-
-GCAGTGATTT
 A T G C A C G T A G T C A C G T T G A C G T C A C A T G C G T A G C A T A G C T A C G T
A C G T C T A G A G T C G C T A A T C G C G A T A C T G T C G A A C G T A C G T A C G T

Gfi1b/MA0483.1/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CTCTCAGATT-
TGCTGTGATTT
 A T G C A C G T A G T C A C G T T G A C G T C A C A T G C G T A G C A T A G C T A C G T
C G A T C T A G G A T C G C A T A T C G C G A T A C T G T C G A A G C T A C G T A C G T

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:10
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CTCTCAGATT-
ACTTTCACTTTC
 A C G T A T G C A C G T A G T C A C G T T G A C G T C A C A T G C G T A G C A T A G C T A C G T
C T G A A T G C G A C T C G A T A G C T A G T C C G T A A T G C A C G T A C G T G A C T A G T C