Information for 5-CCGGTCTGAC (Motif 5)

T A G C A G T C C T A G A C T G A C G T A T G C A C G T A C T G C T G A A G T C
Reverse Opposite:
A C T G A G C T A G T C C G T A A T C G G T C A A G T C A G T C A C T G A T C G
p-value:1e-7
log p-value:-1.756e+01
Information Content per bp:1.871
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif14.29%
Number of Background Sequences with motif278.4
Percentage of Background Sequences with motif0.61%
Average Position of motif in Targets358.5 +/- 205.9bp
Average Position of motif in Background632.4 +/- 254.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CCGGTCTGAC
-CTGTCTGG-
 T A G C A G T C C T A G A C T G A C G T A T G C A C G T A C T G C T G A A G T C
A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CCGGTCTGAC----
--TGTCTGDCACCT
 T A G C A G T C C T A G A C T G A C G T A T G C A C G T A C T G C T G A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:3
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CCGGTCTGAC----
-CTGTCTGTCACCT
 T A G C A G T C C T A G A C T G A C G T A T G C A C G T A C T G C T G A A G T C A C G T A C G T A C G T A C G T
A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CCGGTCTGAC
VBSYGTCTGG-
 A C G T T A G C A G T C C T A G A C T G A C G T A T G C A C G T A C T G C T G A A G T C
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:5
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CCGGTCTGAC--
--GGTCTGGCAT
 T A G C A G T C C T A G A C T G A C G T A T G C A C G T A C T G C T G A A G T C A C G T A C G T
A C G T A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T

TBX15/MA0803.1/Jaspar

Match Rank:6
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CCGGTCTGAC
-AGGTGTGA-
 T A G C A G T C C T A G A C T G A C G T A T G C A C G T A C T G C T G A A G T C
A C G T C T G A C T A G T C A G A C G T A T C G A G C T A C T G C T G A A C G T

TBX1/MA0805.1/Jaspar

Match Rank:7
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CCGGTCTGAC
-AGGTGTGA-
 T A G C A G T C C T A G A C T G A C G T A T G C A C G T A C T G C T G A A G T C
A C G T C T G A T C A G A C T G A G C T A T C G G A C T A C T G T G C A A C G T

MGA/MA0801.1/Jaspar

Match Rank:8
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CCGGTCTGAC
-AGGTGTGA-
 T A G C A G T C C T A G A C T G A C G T A T G C A C G T A C T G C T G A A G T C
A C G T C T G A T C A G A T C G A G C T C T A G G A C T A C T G C T G A A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:9
Score:0.60
Offset:5
Orientation:forward strand
Alignment:CCGGTCTGAC--
-----TTGACAG
 T A G C A G T C C T A G A C T G A C G T A T G C A C G T A C T G C T G A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CCGGTCTGAC--
GTGGCGTGACNG
 T A G C A G T C C T A G A C T G A C G T A T G C A C G T A C T G C T G A A G T C A C G T A C G T
T C A G A C G T C A T G A C T G A T G C A T C G A C G T A T C G C T G A A G T C G A T C C A T G