Information for 4-GCACCAGCCC (Motif 4)

C T A G A G T C C G T A A G T C G T A C C T G A A C T G A G T C A G T C A G T C
Reverse Opposite:
C T A G C T A G A C T G A G T C A G C T A C T G A C T G A C G T A C T G A G T C
p-value:1e-7
log p-value:-1.797e+01
Information Content per bp:1.907
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif20.41%
Number of Background Sequences with motif818.0
Percentage of Background Sequences with motif1.79%
Average Position of motif in Targets456.3 +/- 306.6bp
Average Position of motif in Background560.6 +/- 282.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ASCL1(var.2)/MA1631.1/Jaspar

Match Rank:1
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--GCACCAGCCC-
CAGCACCTGCCCC
 A C G T A C G T C T A G A G T C C G T A A G T C G T A C C T G A A C T G A G T C A G T C A G T C A C G T
A T G C C G T A T A C G A T G C C T G A A T G C T A G C A G C T T A C G A T G C G A T C A T G C A T G C

TCF4/MA0830.2/Jaspar

Match Rank:2
Score:0.76
Offset:-2
Orientation:forward strand
Alignment:--GCACCAGCCC-
CGGCACCTGCCCC
 A C G T A C G T C T A G A G T C C G T A A G T C G T A C C T G A A C T G A G T C A G T C A G T C A C G T
A T G C C A T G T A C G T A G C T C G A A T G C T A G C A G C T T A C G A T G C G A T C A T G C A T G C

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:3
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--GCACCAGCCC
SNGCACCTGCHS
 A C G T A C G T C T A G A G T C C G T A A G T C G T A C C T G A A C T G A G T C A G T C A G T C
T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C

TCF3/MA0522.3/Jaspar

Match Rank:4
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-GCACCAGCCC
CGCACCTGCCC
 A C G T C T A G A G T C C G T A A G T C G T A C C T G A A C T G A G T C A G T C A G T C
T A G C T A C G A T G C T C G A A T G C T A G C A G C T T C A G A G T C T A G C A T G C

TCF12(var.2)/MA1648.1/Jaspar

Match Rank:5
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-GCACCAGCCC
CGCACCTGCCG
 A C G T C T A G A G T C C G T A A G T C G T A C C T G A A C T G A G T C A G T C A G T C
T A G C T A C G A G T C T C G A A T G C T A G C A G C T T C A G A G T C A G T C A T C G

SNAI1/MA1558.1/Jaspar

Match Rank:6
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-GCACCAGCCC
NGCACCTGCN-
 A C G T C T A G A G T C C G T A A G T C G T A C C T G A A C T G A G T C A G T C A G T C
G A C T T C A G G A T C G T C A G A T C A G T C C G A T C A T G G A T C G A T C A C G T

Snail1(Zf)/LS174T-SNAIL1.HA-ChIP-Seq(GSE127183)/Homer

Match Rank:7
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-GCACCAGCCC
TRCACCTGCY-
 A C G T C T A G A G T C C G T A A G T C G T A C C T G A A C T G A G T C A G T C A G T C
A G C T T C G A G T A C T C G A A T G C A T G C G C A T A T C G A G T C A G C T A C G T

ZEB1/MA0103.3/Jaspar

Match Rank:8
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GCACCAGCCC
CCCACCTGCGC
 A C G T C T A G A G T C C G T A A G T C G T A C C T G A A C T G A G T C A G T C A G T C
A T G C A T G C A G T C C T G A A G T C T A G C A G C T T C A G A T G C T A C G A T G C

Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer

Match Rank:9
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GCACCAGCCC-
DGCAGCTGCYSS
 A C G T C T A G A G T C C G T A A G T C G T A C C T G A A C T G A G T C A G T C A G T C A C G T
C T G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G T C G A T C A T G C A T G C

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GCACCAGCCC
NNCACCTGNN-
 A C G T C T A G A G T C C G T A A G T C G T A C C T G A A C T G A G T C A G T C A G T C
A T G C T G C A A G T C C G T A A G T C A G T C A C G T A C T G A T G C G T C A A C G T