Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 48)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 45131)	% of Background Sequences with Motif
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-4	-1.064e+01	0.0105	31.0	64.58%	15664.8	34.71%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-3	-7.190e+00	0.1659	37.0	77.08%	24285.9	53.82%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e-2	-6.294e+00	0.2710	35.0	72.92%	23133.9	51.26%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-2	-6.172e+00	0.2710	7.0	14.58%	1704.6	3.78%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-2	-6.132e+00	0.2710	25.0	52.08%	14112.9	31.27%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-2	-5.968e+00	0.2710	13.0	27.08%	5223.5	11.57%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-2	-5.861e+00	0.2710	32.0	66.67%	20654.6	45.77%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-2	-5.603e+00	0.2710	23.0	47.92%	12937.3	28.67%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-2	-5.395e+00	0.2710	18.0	37.50%	9164.9	20.31%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e-2	-5.125e+00	0.2710	31.0	64.58%	20512.1	45.45%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-2	-5.006e+00	0.2710	45.0	93.75%	35927.1	79.61%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-2	-4.970e+00	0.2710	13.0	27.08%	5863.4	12.99%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-2	-4.853e+00	0.2710	22.0	45.83%	12843.3	28.46%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e-2	-4.684e+00	0.2905	7.0	14.58%	2243.1	4.97%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-2	-4.630e+00	0.2905	16.0	33.33%	8301.5	18.40%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e-1	-4.569e+00	0.2905	21.0	43.75%	12309.7	27.28%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e-1	-4.433e+00	0.3075	8.0	16.67%	2943.4	6.52%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-1	-4.311e+00	0.3280	17.0	35.42%	9360.2	20.74%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-1	-4.233e+00	0.3360	21.0	43.75%	12669.4	28.07%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-1	-4.124e+00	0.3558	23.0	47.92%	14485.9	32.10%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-1	-4.121e+00	0.3558	8.0	16.67%	3113.2	6.90%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-1	-4.107e+00	0.3558	17.0	35.42%	9560.5	21.19%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-1	-4.100e+00	0.3558	36.0	75.00%	26698.1	59.16%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-1	-4.040e+00	0.3558	13.0	27.08%	6581.6	14.58%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-1	-4.038e+00	0.3558	5.0	10.42%	1427.2	3.16%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-1	-3.727e+00	0.4071	9.0	18.75%	4009.7	8.89%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-1	-3.694e+00	0.4071	33.0	68.75%	24244.6	53.72%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-1	-3.671e+00	0.4071	23.0	47.92%	15041.0	33.33%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-1	-3.654e+00	0.4071	18.0	37.50%	10845.0	24.03%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e-1	-3.629e+00	0.4071	19.0	39.58%	11696.1	25.92%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-1	-3.584e+00	0.4071	41.0	85.42%	32733.7	72.54%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-1	-3.573e+00	0.4071	18.0	37.50%	10937.9	24.24%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-1	-3.571e+00	0.4071	10.0	20.83%	4814.0	10.67%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-1	-3.554e+00	0.4071	11.0	22.92%	5540.7	12.28%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e-1	-3.547e+00	0.4071	31.0	64.58%	22514.4	49.89%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-1	-3.467e+00	0.4071	29.0	60.42%	20736.6	45.95%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-1	-3.440e+00	0.4071	20.0	41.67%	12761.2	28.28%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-1	-3.439e+00	0.4071	9.0	18.75%	4218.2	9.35%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e-1	-3.358e+00	0.4071	20.0	41.67%	12865.9	28.51%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-1	-3.342e+00	0.4071	12.0	25.00%	6467.1	14.33%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e-1	-3.305e+00	0.4071	9.0	18.75%	4321.1	9.58%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-1	-3.298e+00	0.4071	10.0	20.83%	5036.7	11.16%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-1	-3.293e+00	0.4071	21.0	43.75%	13804.1	30.59%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e-1	-3.284e+00	0.4071	35.0	72.92%	26826.0	59.44%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-1	-3.210e+00	0.4071	26.0	54.17%	18342.3	40.65%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e-1	-3.192e+00	0.4071	21.0	43.75%	13939.3	30.89%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-1	-3.168e+00	0.4071	9.0	18.75%	4431.1	9.82%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-1	-3.145e+00	0.4071	9.0	18.75%	4450.4	9.86%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-1	-3.117e+00	0.4071	19.0	39.58%	12333.3	27.33%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-1	-3.062e+00	0.4116	8.0	16.67%	3814.9	8.45%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e-1	-2.960e+00	0.4469	30.0	62.50%	22444.9	49.74%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e-1	-2.867e+00	0.4812	4.0	8.33%	1363.9	3.02%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-1	-2.826e+00	0.4917	6.0	12.50%	2629.9	5.83%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e-1	-2.799e+00	0.4961	21.0	43.75%	14499.5	32.13%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-1	-2.796e+00	0.4961	5.0	10.42%	2003.1	4.44%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-1	-2.789e+00	0.4961	22.0	45.83%	15391.4	34.11%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e-1	-2.685e+00	0.5267	12.0	25.00%	7156.6	15.86%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-1	-2.680e+00	0.5267	19.0	39.58%	12942.8	28.68%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-1	-2.629e+00	0.5381	12.0	25.00%	7221.0	16.00%
Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer	CHCAGCRGGRGG	1e-1	-2.628e+00	0.5381	13.0	27.08%	8019.7	17.77%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-1	-2.591e+00	0.5406	21.0	43.75%	14819.0	32.84%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-1	-2.589e+00	0.5406	13.0	27.08%	8067.7	17.88%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e-1	-2.588e+00	0.5406	7.0	14.58%	3493.1	7.74%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e-1	-2.587e+00	0.5406	13.0	27.08%	8070.9	17.88%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-1	-2.561e+00	0.5406	13.0	27.08%	8102.5	17.95%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-1	-2.551e+00	0.5406	24.0	50.00%	17558.4	38.91%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-1	-2.542e+00	0.5406	15.0	31.25%	9763.3	21.63%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-1	-2.471e+00	0.5468	15.0	31.25%	9861.8	21.85%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-1	-2.462e+00	0.5468	17.0	35.42%	11556.6	25.61%
Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer	VVRRAACAATGG	1e-1	-2.450e+00	0.5468	7.0	14.58%	3611.6	8.00%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-1	-2.433e+00	0.5468	35.0	72.92%	28201.0	62.49%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-1	-2.431e+00	0.5468	3.0	6.25%	987.2	2.19%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-1	-2.416e+00	0.5468	17.0	35.42%	11626.1	25.76%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-1	-2.408e+00	0.5468	13.0	27.08%	8300.9	18.39%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-1	-2.387e+00	0.5468	15.0	31.25%	9980.3	22.12%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e-1	-2.377e+00	0.5468	20.0	41.67%	14284.5	31.65%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e-1	-2.367e+00	0.5468	16.0	33.33%	10850.8	24.04%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e-1	-2.361e+00	0.5468	2.0	4.17%	484.3	1.07%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-1	-2.353e+00	0.5468	7.0	14.58%	3698.7	8.20%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-1	-2.346e+00	0.5468	5.0	10.42%	2293.6	5.08%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-1	-2.323e+00	0.5468	14.0	29.17%	9239.6	20.47%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e-1	-2.316e+00	0.5468	16.0	33.33%	10928.9	24.22%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-1	-2.309e+00	0.5468	25.0	52.08%	18891.0	41.86%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-2.288e+00	0.5468	18.0	37.50%	12687.2	28.11%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-2.257e+00	0.5468	37.0	77.08%	30525.7	67.64%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-2.244e+00	0.5468	36.0	75.00%	29541.3	65.46%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-2.226e+00	0.5468	7.0	14.58%	3818.9	8.46%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e0	-2.196e+00	0.5563	15.0	31.25%	10265.7	22.75%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e0	-2.194e+00	0.5563	27.0	56.25%	20950.1	46.42%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e0	-2.194e+00	0.5563	26.0	54.17%	20022.1	44.37%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e0	-2.152e+00	0.5624	15.0	31.25%	10334.6	22.90%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-2.149e+00	0.5624	18.0	37.50%	12917.1	28.62%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-2.132e+00	0.5624	30.0	62.50%	23896.2	52.95%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-2.131e+00	0.5624	24.0	50.00%	18304.3	40.56%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-2.128e+00	0.5624	23.0	47.92%	17400.5	38.56%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-2.123e+00	0.5624	2.0	4.17%	559.5	1.24%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-2.098e+00	0.5624	14.0	29.17%	9573.8	21.22%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-2.086e+00	0.5624	13.0	27.08%	8753.6	19.40%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-2.083e+00	0.5624	14.0	29.17%	9596.6	21.27%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-2.067e+00	0.5624	4.0	8.33%	1814.0	4.02%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-2.067e+00	0.5624	6.0	12.50%	3231.0	7.16%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-2.057e+00	0.5624	9.0	18.75%	5538.0	12.27%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-2.048e+00	0.5624	11.0	22.92%	7158.9	15.86%
En1(Homeobox)/SUM149-EN1-ChIP-Seq(GSE120957)/Homer	NDCTAATTAS	1e0	-2.041e+00	0.5624	29.0	60.42%	23126.0	51.25%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e0	-2.018e+00	0.5624	18.0	37.50%	13146.9	29.13%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-2.010e+00	0.5624	16.0	33.33%	11420.1	25.31%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.990e+00	0.5624	4.0	8.33%	1867.5	4.14%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-1.986e+00	0.5624	12.0	25.00%	8070.9	17.88%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-1.973e+00	0.5624	23.0	47.92%	17697.3	39.22%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e0	-1.970e+00	0.5624	8.0	16.67%	4856.1	10.76%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e0	-1.969e+00	0.5624	19.0	39.58%	14116.1	31.28%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-1.951e+00	0.5624	1.0	2.08%	143.5	0.32%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.947e+00	0.5624	9.0	18.75%	5676.8	12.58%
DLX2(Homeobox)/BasalGanglia-Dlx2-ChIP-seq(GSE124936)/Homer	NNNTAATTAS	1e0	-1.937e+00	0.5624	25.0	52.08%	19601.2	43.44%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	-1.917e+00	0.5627	17.0	35.42%	12452.7	27.59%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-1.891e+00	0.5726	42.0	87.50%	36366.3	80.59%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-1.874e+00	0.5773	9.0	18.75%	5772.7	12.79%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-1.861e+00	0.5797	31.0	64.58%	25400.0	56.28%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-1.859e+00	0.5797	10.0	20.83%	6605.2	14.64%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-1.852e+00	0.5797	11.0	22.92%	7440.7	16.49%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-1.850e+00	0.5797	28.0	58.33%	22575.0	50.02%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-1.843e+00	0.5797	23.0	47.92%	17958.8	39.80%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-1.832e+00	0.5797	22.0	45.83%	17072.2	37.83%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e0	-1.820e+00	0.5797	20.0	41.67%	15293.1	33.89%
DLX5(Homeobox)/BasalGanglia-Dlx5-ChIP-seq(GSE124936)/Homer	SSTAATTA	1e0	-1.817e+00	0.5797	16.0	33.33%	11761.7	26.06%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.814e+00	0.5797	17.0	35.42%	12642.3	28.01%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-1.800e+00	0.5797	29.0	60.42%	23626.0	52.35%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-1.794e+00	0.5797	7.0	14.58%	4280.1	9.48%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.785e+00	0.5797	12.0	25.00%	8383.9	18.58%
Snail1(Zf)/LS174T-SNAIL1.HA-ChIP-Seq(GSE127183)/Homer	TRCACCTGCY	1e0	-1.779e+00	0.5797	15.0	31.25%	10962.9	24.29%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-1.767e+00	0.5797	12.0	25.00%	8413.0	18.64%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-1.751e+00	0.5797	25.0	52.08%	19991.8	44.30%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-1.739e+00	0.5810	16.0	33.33%	11906.8	26.38%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	-1.738e+00	0.5810	35.0	72.92%	29542.5	65.46%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-1.738e+00	0.5810	9.0	18.75%	5960.1	13.21%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-1.719e+00	0.5810	20.0	41.67%	15499.9	34.35%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-1.718e+00	0.5810	12.0	25.00%	8494.7	18.82%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.711e+00	0.5810	5.0	10.42%	2827.1	6.26%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-1.710e+00	0.5810	8.0	16.67%	5185.3	11.49%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e0	-1.704e+00	0.5810	27.0	56.25%	21955.9	48.65%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-1.673e+00	0.5859	4.0	8.33%	2118.7	4.69%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-1.660e+00	0.5894	12.0	25.00%	8593.4	19.04%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.636e+00	0.5994	2.0	4.17%	762.1	1.69%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-1.632e+00	0.5994	15.0	31.25%	11237.4	24.90%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-1.630e+00	0.5994	33.0	68.75%	27830.1	61.67%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-1.623e+00	0.5994	10.0	20.83%	6962.8	15.43%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.601e+00	0.6034	3.0	6.25%	1455.6	3.23%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	-1.600e+00	0.6034	12.0	25.00%	8698.8	19.28%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-1.600e+00	0.6034	8.0	16.67%	5338.8	11.83%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-1.593e+00	0.6034	14.0	29.17%	10440.7	23.14%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e0	-1.584e+00	0.6034	10.0	20.83%	7025.4	15.57%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-1.574e+00	0.6034	15.0	31.25%	11351.8	25.15%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-1.536e+00	0.6187	8.0	16.67%	5430.5	12.03%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-1.534e+00	0.6187	16.0	33.33%	12314.3	27.29%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e0	-1.528e+00	0.6187	14.0	29.17%	10566.9	23.42%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.509e+00	0.6235	5.0	10.42%	3042.0	6.74%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-1.508e+00	0.6235	5.0	10.42%	3043.3	6.74%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-1.505e+00	0.6235	17.0	35.42%	13266.0	29.40%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-1.489e+00	0.6245	26.0	54.17%	21523.3	47.69%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-1.484e+00	0.6245	23.0	47.92%	18756.3	41.56%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.483e+00	0.6245	3.0	6.25%	1546.7	3.43%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e0	-1.480e+00	0.6245	9.0	18.75%	6353.5	14.08%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-1.473e+00	0.6245	15.0	31.25%	11558.1	25.61%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-1.467e+00	0.6245	25.0	52.08%	20644.9	45.75%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-1.460e+00	0.6245	4.0	8.33%	2318.1	5.14%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-1.449e+00	0.6245	9.0	18.75%	6404.8	14.19%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e0	-1.420e+00	0.6372	8.0	16.67%	5610.6	12.43%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-1.406e+00	0.6422	23.0	47.92%	18946.9	41.99%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e0	-1.403e+00	0.6422	6.0	12.50%	3977.4	8.81%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.387e+00	0.6469	2.0	4.17%	903.2	2.00%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-1.386e+00	0.6469	33.0	68.75%	28407.5	62.95%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-1.355e+00	0.6597	7.0	14.58%	4873.2	10.80%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-1.343e+00	0.6637	13.0	27.08%	10066.3	22.31%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-1.342e+00	0.6637	23.0	47.92%	19106.6	42.34%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-1.336e+00	0.6637	10.0	20.83%	7460.7	16.53%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-1.318e+00	0.6689	10.0	20.83%	7494.2	16.61%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-1.315e+00	0.6689	13.0	27.08%	10127.0	22.44%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-1.312e+00	0.6689	3.0	6.25%	1695.8	3.76%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.309e+00	0.6689	4.0	8.33%	2480.1	5.50%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.305e+00	0.6689	2.0	4.17%	957.5	2.12%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-1.297e+00	0.6689	16.0	33.33%	12841.2	28.46%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-1.290e+00	0.6689	27.0	56.25%	22965.2	50.89%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-1.286e+00	0.6689	15.0	31.25%	11971.9	26.53%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e0	-1.279e+00	0.6689	11.0	22.92%	8444.0	18.71%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-1.262e+00	0.6731	40.0	83.33%	35544.2	78.76%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.259e+00	0.6731	26.0	54.17%	22111.1	49.00%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.259e+00	0.6731	28.0	58.33%	23988.8	53.16%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-1.257e+00	0.6731	6.0	12.50%	4186.6	9.28%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-1.250e+00	0.6731	25.0	52.08%	21204.3	46.99%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e0	-1.222e+00	0.6824	30.0	62.50%	25977.0	57.56%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.216e+00	0.6830	6.0	12.50%	4250.5	9.42%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-1.211e+00	0.6830	23.0	47.92%	19455.9	43.11%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-1.208e+00	0.6830	32.0	66.67%	27914.6	61.86%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-1.193e+00	0.6877	3.0	6.25%	1811.4	4.01%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-1.176e+00	0.6962	20.0	41.67%	16786.0	37.20%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-1.160e+00	0.7037	7.0	14.58%	5196.1	11.51%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-1.158e+00	0.7037	4.0	8.33%	2662.1	5.90%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.155e+00	0.7037	8.0	16.67%	6072.0	13.46%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e0	-1.151e+00	0.7037	10.0	20.83%	7831.5	17.35%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-1.137e+00	0.7058	3.0	6.25%	1871.4	4.15%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.132e+00	0.7060	2.0	4.17%	1087.5	2.41%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-1.126e+00	0.7065	17.0	35.42%	14179.5	31.42%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e0	-1.110e+00	0.7144	12.0	25.00%	9703.1	21.50%
Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer	NHRTCACGACDN	1e0	-1.106e+00	0.7144	14.0	29.17%	11511.5	25.51%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-1.105e+00	0.7144	15.0	31.25%	12418.6	27.52%
Fos(bZIP)/TSC-Fos-ChIP-Seq(GSE110950)/Homer	NDATGASTCAYN	1e0	-1.101e+00	0.7144	8.0	16.67%	6176.5	13.69%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-1.100e+00	0.7144	1.0	2.08%	378.2	0.84%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-1.086e+00	0.7144	17.0	35.42%	14289.1	31.66%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-1.076e+00	0.7179	8.0	16.67%	6227.1	13.80%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-1.075e+00	0.7179	2.0	4.17%	1135.1	2.52%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.070e+00	0.7179	6.0	12.50%	4491.2	9.95%
DLX1(Homeobox)/BasalGanglia-Dlx1-ChIP-seq(GSE124936)/Homer	NSNNTAATTA	1e0	-1.069e+00	0.7179	21.0	43.75%	18011.2	39.91%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.054e+00	0.7202	12.0	25.00%	9840.2	21.81%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-1.050e+00	0.7202	19.0	39.58%	16222.1	35.95%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.048e+00	0.7202	2.0	4.17%	1159.0	2.57%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-1.041e+00	0.7202	10.0	20.83%	8077.3	17.90%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-1.040e+00	0.7202	12.0	25.00%	9874.7	21.88%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-1.036e+00	0.7202	22.0	45.83%	19035.7	42.18%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.028e+00	0.7202	3.0	6.25%	1996.9	4.43%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-1.023e+00	0.7202	21.0	43.75%	18148.5	40.22%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-1.020e+00	0.7202	12.0	25.00%	9926.3	22.00%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-1.005e+00	0.7258	14.0	29.17%	11779.3	26.10%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-9.897e-01	0.7334	19.0	39.58%	16403.1	36.35%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-9.806e-01	0.7367	7.0	14.58%	5539.7	12.28%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-9.751e-01	0.7376	2.0	4.17%	1228.3	2.72%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-9.723e-01	0.7376	9.0	18.75%	7342.4	16.27%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-9.636e-01	0.7395	11.0	22.92%	9166.6	20.31%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e0	-9.517e-01	0.7451	11.0	22.92%	9197.4	20.38%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-9.435e-01	0.7480	10.0	20.83%	8313.8	18.42%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e0	-9.358e-01	0.7505	30.0	62.50%	26830.7	59.46%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-9.300e-01	0.7515	5.0	10.42%	3868.7	8.57%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e0	-9.235e-01	0.7532	6.0	12.50%	4767.9	10.57%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-9.125e-01	0.7582	10.0	20.83%	8392.8	18.60%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-9.002e-01	0.7644	5.0	10.42%	3923.2	8.69%
RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-8.988e-01	0.7644	2.0	4.17%	1307.1	2.90%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-8.772e-01	0.7755	1.0	2.08%	502.6	1.11%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-8.676e-01	0.7797	7.0	14.58%	5785.3	12.82%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-8.568e-01	0.7848	7.0	14.58%	5810.4	12.88%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-8.559e-01	0.7848	2.0	4.17%	1355.4	3.00%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-8.541e-01	0.7848	8.0	16.67%	6724.7	14.90%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-8.357e-01	0.7915	12.0	25.00%	10434.8	23.12%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-8.320e-01	0.7915	4.0	8.33%	3156.5	6.99%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-8.303e-01	0.7915	2.0	4.17%	1385.2	3.07%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-8.231e-01	0.7918	4.0	8.33%	3172.5	7.03%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-8.209e-01	0.7918	7.0	14.58%	5896.0	13.07%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e0	-8.128e-01	0.7934	17.0	35.42%	15126.5	33.52%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-8.091e-01	0.7934	22.0	45.83%	19786.2	43.85%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-8.063e-01	0.7934	37.0	77.08%	33857.3	75.03%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-8.049e-01	0.7934	5.0	10.42%	4111.5	9.11%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-8.032e-01	0.7934	2.0	4.17%	1418.0	3.14%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-7.992e-01	0.7934	9.0	18.75%	7782.0	17.24%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e0	-7.968e-01	0.7934	31.0	64.58%	28244.4	62.59%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-7.929e-01	0.7934	11.0	22.92%	9642.8	21.37%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-7.902e-01	0.7934	22.0	45.83%	19855.8	44.00%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-7.634e-01	0.8042	7.0	14.58%	6038.6	13.38%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-7.523e-01	0.8101	14.0	29.17%	12551.2	27.81%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-7.494e-01	0.8101	12.0	25.00%	10704.4	23.72%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-7.330e-01	0.8194	10.0	20.83%	8900.9	19.72%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-7.236e-01	0.8240	3.0	6.25%	2441.2	5.41%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	-7.233e-01	0.8240	15.0	31.25%	13583.0	30.10%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-7.100e-01	0.8289	1.0	2.08%	631.2	1.40%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-7.044e-01	0.8303	1.0	2.08%	636.6	1.41%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e0	-6.946e-01	0.8353	16.0	33.33%	14622.2	32.40%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-6.937e-01	0.8353	19.0	39.58%	17426.8	38.62%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-6.863e-01	0.8359	6.0	12.50%	5311.4	11.77%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	-6.809e-01	0.8373	4.0	8.33%	3454.4	7.65%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-6.780e-01	0.8373	3.0	6.25%	2524.1	5.59%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e0	-6.744e-01	0.8373	1.0	2.08%	664.8	1.47%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-6.701e-01	0.8373	3.0	6.25%	2539.9	5.63%
LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e0	-6.621e-01	0.8405	20.0	41.67%	18488.7	40.97%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-6.587e-01	0.8405	2.0	4.17%	1618.5	3.59%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-6.569e-01	0.8405	5.0	10.42%	4449.3	9.86%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-6.307e-01	0.8578	11.0	22.92%	10178.5	22.55%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-6.263e-01	0.8584	29.0	60.42%	27040.8	59.92%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-6.234e-01	0.8584	15.0	31.25%	13965.7	30.95%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-6.207e-01	0.8584	24.0	50.00%	22402.8	49.64%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e0	-6.179e-01	0.8584	20.0	41.67%	18675.2	41.38%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-5.981e-01	0.8702	12.0	25.00%	11243.1	24.91%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e0	-5.934e-01	0.8712	10.0	20.83%	9371.5	20.77%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-5.726e-01	0.8864	2.0	4.17%	1763.0	3.91%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e0	-5.636e-01	0.8912	3.0	6.25%	2760.0	6.12%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e0	-5.467e-01	0.9032	9.0	18.75%	8595.1	19.05%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-5.393e-01	0.9067	20.0	41.67%	19033.9	42.18%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-5.368e-01	0.9067	15.0	31.25%	14336.1	31.77%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e0	-5.207e-01	0.9172	4.0	8.33%	3849.6	8.53%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-5.172e-01	0.9172	1.0	2.08%	844.8	1.87%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e0	-4.885e-01	0.9406	8.0	16.67%	7859.5	17.42%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-4.877e-01	0.9406	13.0	27.08%	12665.3	28.07%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-4.858e-01	0.9406	8.0	16.67%	7871.0	17.44%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-4.857e-01	0.9406	3.0	6.25%	2950.8	6.54%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-4.712e-01	0.9438	2.0	4.17%	1965.1	4.35%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-4.659e-01	0.9457	8.0	16.67%	7951.3	17.62%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-4.605e-01	0.9475	7.0	14.58%	6997.5	15.51%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-4.582e-01	0.9475	15.0	31.25%	14715.9	32.61%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-4.551e-01	0.9475	6.0	12.50%	6035.1	13.37%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-4.490e-01	0.9488	13.0	27.08%	12853.3	28.48%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	-4.411e-01	0.9531	17.0	35.42%	16705.8	37.02%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-4.102e-01	0.9797	1.0	2.08%	1012.4	2.24%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e0	-4.028e-01	0.9837	28.0	58.33%	27218.2	60.31%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-3.997e-01	0.9837	3.0	6.25%	3198.6	7.09%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-3.995e-01	0.9837	10.0	20.83%	10206.3	22.62%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-3.942e-01	0.9837	4.0	8.33%	4252.7	9.42%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-3.935e-01	0.9837	1.0	2.08%	1043.7	2.31%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-3.847e-01	0.9851	23.0	47.92%	22684.1	50.27%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-3.827e-01	0.9851	24.0	50.00%	23630.1	52.36%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	-3.817e-01	0.9851	28.0	58.33%	27343.7	60.59%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-3.785e-01	0.9851	2.0	4.17%	2196.1	4.87%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e0	-3.679e-01	0.9888	16.0	33.33%	16176.7	35.85%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-3.672e-01	0.9888	2.0	4.17%	2228.6	4.94%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-3.611e-01	0.9891	1.0	2.08%	1108.8	2.46%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-3.495e-01	0.9975	1.0	2.08%	1133.5	2.51%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-3.470e-01	0.9975	7.0	14.58%	7505.8	16.63%
KLF1(Zf)/HUDEP2-KLF1-CutnRun(GSE136251)/Homer	VDGGGYGGGGCY	1e0	-3.458e-01	0.9975	20.0	41.67%	20117.5	44.58%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e0	-3.357e-01	1.0000	1.0	2.08%	1164.4	2.58%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-3.273e-01	1.0000	14.0	29.17%	14512.8	32.16%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-3.209e-01	1.0000	2.0	4.17%	2371.6	5.26%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-3.193e-01	1.0000	13.0	27.08%	13595.2	30.13%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-3.175e-01	1.0000	17.0	35.42%	17462.4	38.70%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-3.021e-01	1.0000	1.0	2.08%	1246.1	2.76%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-2.847e-01	1.0000	2.0	4.17%	2498.1	5.54%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-2.766e-01	1.0000	2.0	4.17%	2529.8	5.61%
Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer	BCCWTTGTBYKV	1e0	-2.760e-01	1.0000	19.0	39.58%	19676.0	43.60%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-2.759e-01	1.0000	16.0	33.33%	16808.6	37.25%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-2.736e-01	1.0000	1.0	2.08%	1324.3	2.93%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-2.639e-01	1.0000	3.0	6.25%	3720.5	8.24%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-2.587e-01	1.0000	2.0	4.17%	2600.2	5.76%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-2.568e-01	1.0000	2.0	4.17%	2608.8	5.78%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-2.564e-01	1.0000	4.0	8.33%	4859.8	10.77%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-2.554e-01	1.0000	1.0	2.08%	1379.6	3.06%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-2.408e-01	1.0000	3.0	6.25%	3834.6	8.50%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-2.389e-01	1.0000	7.0	14.58%	8145.1	18.05%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-2.323e-01	1.0000	4.0	8.33%	4995.8	11.07%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-2.287e-01	1.0000	2.0	4.17%	2731.2	6.05%
CREB5(bZIP)/LNCaP-CREB5.V5-ChIP-Seq(GSE137775)/Homer	VVATGACGTCAT	1e0	-2.266e-01	1.0000	4.0	8.33%	5029.2	11.14%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-2.264e-01	1.0000	1.0	2.08%	1476.6	3.27%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-2.257e-01	1.0000	3.0	6.25%	3914.0	8.67%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-2.227e-01	1.0000	10.0	20.83%	11335.6	25.12%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-2.160e-01	1.0000	2.0	4.17%	2792.6	6.19%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-2.151e-01	1.0000	2.0	4.17%	2796.2	6.20%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-2.150e-01	1.0000	3.0	6.25%	3974.9	8.81%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	-2.131e-01	1.0000	6.0	12.50%	7280.3	16.13%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-2.070e-01	1.0000	1.0	2.08%	1549.2	3.43%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e0	-2.057e-01	1.0000	13.0	27.08%	14480.9	32.09%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-2.047e-01	1.0000	2.0	4.17%	2849.2	6.31%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-2.037e-01	1.0000	6.0	12.50%	7351.7	16.29%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-2.030e-01	1.0000	4.0	8.33%	5179.4	11.48%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-1.942e-01	1.0000	3.0	6.25%	4099.6	9.08%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-1.880e-01	1.0000	1.0	2.08%	1628.6	3.61%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.873e-01	1.0000	1.0	2.08%	1631.0	3.61%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-1.868e-01	1.0000	3.0	6.25%	4147.5	9.19%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-1.860e-01	1.0000	21.0	43.75%	22386.3	49.61%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-1.831e-01	1.0000	3.0	6.25%	4171.7	9.24%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.822e-01	1.0000	1.0	2.08%	1654.2	3.67%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.819e-01	1.0000	2.0	4.17%	2974.9	6.59%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e0	-1.804e-01	1.0000	1.0	2.08%	1662.7	3.68%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e0	-1.695e-01	1.0000	8.0	16.67%	9758.5	21.62%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-1.683e-01	1.0000	21.0	43.75%	22582.1	50.04%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-1.642e-01	1.0000	16.0	33.33%	17852.3	39.56%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-1.638e-01	1.0000	2.0	4.17%	3085.2	6.84%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.552e-01	1.0000	1.0	2.08%	1787.3	3.96%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-1.342e-01	1.0000	3.0	6.25%	4547.5	10.08%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-1.217e-01	1.0000	3.0	6.25%	4663.2	10.33%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-1.183e-01	1.0000	8.0	16.67%	10338.1	22.91%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-1.138e-01	1.0000	14.0	29.17%	16558.1	36.69%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-1.135e-01	1.0000	7.0	14.58%	9327.0	20.67%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.117e-01	1.0000	1.0	2.08%	2064.6	4.57%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e0	-1.071e-01	1.0000	13.0	27.08%	15664.8	34.71%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e0	-1.062e-01	1.0000	6.0	12.50%	8324.9	18.45%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	-1.061e-01	1.0000	12.0	25.00%	14671.7	32.51%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-9.796e-02	1.0000	2.0	4.17%	3625.4	8.03%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-9.476e-02	1.0000	4.0	8.33%	6179.8	13.69%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-9.363e-02	1.0000	2.0	4.17%	3672.5	8.14%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-9.290e-02	1.0000	1.0	2.08%	2221.8	4.92%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-9.193e-02	1.0000	1.0	2.08%	2230.9	4.94%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-7.868e-02	1.0000	3.0	6.25%	5174.3	11.47%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-7.697e-02	1.0000	1.0	2.08%	2382.7	5.28%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-7.623e-02	1.0000	2.0	4.17%	3885.9	8.61%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-7.308e-02	1.0000	3.0	6.25%	5259.6	11.65%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-6.839e-02	1.0000	5.0	10.42%	7783.9	17.25%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-6.691e-02	1.0000	3.0	6.25%	5360.7	11.88%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-5.722e-02	1.0000	20.0	41.67%	23514.5	52.11%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-5.577e-02	1.0000	15.0	31.25%	18728.8	41.50%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-5.390e-02	1.0000	14.0	29.17%	17784.8	39.41%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e0	-4.798e-02	1.0000	15.0	31.25%	18961.0	42.02%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-3.493e-02	1.0000	3.0	6.25%	6086.5	13.49%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-2.891e-02	1.0000	16.0	33.33%	20689.9	45.85%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-2.758e-02	1.0000	4.0	8.33%	7664.6	16.98%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-2.296e-02	1.0000	7.0	14.58%	11518.6	25.52%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-2.268e-02	1.0000	8.0	16.67%	12673.8	28.08%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-1.885e-02	1.0000	14.0	29.17%	19286.9	42.74%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e0	-1.790e-02	1.0000	6.0	12.50%	10647.9	23.60%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-1.675e-02	1.0000	8.0	16.67%	13055.1	28.93%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.544e-02	1.0000	12.0	25.00%	17497.0	38.77%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-9.018e-03	1.0000	3.0	6.25%	7506.0	16.63%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-7.304e-03	1.0000	9.0	18.75%	15179.0	33.64%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-6.726e-03	1.0000	1.0	2.08%	4470.8	9.91%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-6.419e-03	1.0000	5.0	10.42%	10563.6	23.41%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-5.446e-03	1.0000	1.0	2.08%	4649.0	10.30%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-3.338e-03	1.0000	2.0	4.17%	6909.4	15.31%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-2.254e-03	1.0000	2.0	4.17%	7262.3	16.09%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.498e-03	1.0000	5.0	10.42%	12044.9	26.69%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-4.830e-04	1.0000	2.0	4.17%	8600.2	19.06%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e0	-3.570e-04	1.0000	7.0	14.58%	15936.5	35.31%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-1.360e-04	1.0000	3.0	6.25%	11331.4	25.11%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-0.000e+00	1.0000	0.0	0.00%	443.6	0.98%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-0.000e+00	1.0000	0.0	0.00%	293.6	0.65%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-0.000e+00	1.0000	0.0	0.00%	526.7	1.17%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-0.000e+00	1.0000	0.0	0.00%	426.6	0.95%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-0.000e+00	1.0000	0.0	0.00%	174.6	0.39%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-0.000e+00	1.0000	0.0	0.00%	48.2	0.11%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-0.000e+00	1.0000	0.0	0.00%	891.0	1.97%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-0.000e+00	1.0000	0.0	0.00%	891.0	1.97%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-0.000e+00	1.0000	0.0	0.00%	149.6	0.33%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-0.000e+00	1.0000	0.0	0.00%	1960.9	4.35%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-0.000e+00	1.0000	0.0	0.00%	333.0	0.74%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-0.000e+00	1.0000	0.0	0.00%	1234.2	2.73%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-0.000e+00	1.0000	0.0	0.00%	2720.5	6.03%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-0.000e+00	1.0000	0.0	0.00%	1290.5	2.86%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-0.000e+00	1.0000	0.0	0.00%	119.7	0.27%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-0.000e+00	1.0000	0.0	0.00%	1310.9	2.90%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-0.000e+00	1.0000	0.0	0.00%	1006.0	2.23%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-0.000e+00	1.0000	0.0	0.00%	260.8	0.58%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-0.000e+00	1.0000	0.0	0.00%	137.5	0.30%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-0.000e+00	1.0000	0.0	0.00%	1618.8	3.59%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-0.000e+00	1.0000	0.0	0.00%	21.0	0.05%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-0.000e+00	1.0000	0.0	0.00%	404.4	0.90%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e0	-0.000e+00	1.0000	0.0	0.00%	483.4	1.07%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-0.000e+00	1.0000	0.0	0.00%	1639.8	3.63%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-0.000e+00	1.0000	0.0	0.00%	853.1	1.89%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	1390.8	3.08%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	1390.8	3.08%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	0.000e+00	1.0000	0.0	0.00%	33.6	0.07%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	0.000e+00	1.0000	0.0	0.00%	2370.5	5.25%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	0.000e+00	1.0000	0.0	0.00%	171.7	0.38%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	180.0	0.40%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	0.000e+00	1.0000	0.0	0.00%	950.1	2.11%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	0.000e+00	1.0000	0.0	0.00%	543.2	1.20%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	0.000e+00	1.0000	0.0	0.00%	396.4	0.88%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	0.000e+00	1.0000	0.0	0.00%	5629.3	12.47%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	0.000e+00	1.0000	0.0	0.00%	225.4	0.50%