Information for 6-GCTGCTGCWA (Motif 6)

A C T G A G T C A C G T A C T G A G T C A G C T A C T G A G T C G C A T C T G A
Reverse Opposite:
A G C T C G T A A C T G A G T C C T G A C T A G A G T C C G T A A C T G A G T C
p-value:1e-7
log p-value:-1.703e+01
Information Content per bp:1.863
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif27.08%
Number of Background Sequences with motif1822.7
Percentage of Background Sequences with motif4.04%
Average Position of motif in Targets636.3 +/- 235.3bp
Average Position of motif in Background549.7 +/- 305.5bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:1
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-GCTGCTGCWA----
AGATGCTRCTRCCHT
 A C G T A C T G A G T C A C G T A C T G A G T C A G C T A C T G A G T C G C A T C T G A A C G T A C G T A C G T A C G T
C G T A T C A G T G C A C G A T C T A G T G A C G A C T C T A G A G T C G A C T C T A G A G T C G A T C G C T A G A C T

Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer

Match Rank:2
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---GCTGCTGCWA
SSRGCAGCTGCH-
 A C G T A C G T A C G T A C T G A G T C A C G T A C T G A G T C A G C T A C T G A G T C G C A T C T G A
T A C G T A C G C T A G T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G T C G A C T A C G T

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.70
Offset:0
Orientation:forward strand
Alignment:GCTGCTGCWA
NATGTTGCAA
 A C T G A G T C A C G T A C T G A G T C A G C T A C T G A G T C G C A T C T G A
C T A G T C G A C G A T C T A G G C A T C A G T C T A G G A T C C G T A G T C A

NHLH1/MA0048.2/Jaspar

Match Rank:4
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-GCTGCTGCWA
CGCAGCTGCG-
 A C G T A C T G A G T C A C G T A C T G A G T C A G C T A C T G A G T C G C A T C T G A
T G A C T C A G G T A C T G C A A T C G T A G C A C G T T A C G G A T C A C T G A C G T

PB0003.1_Ascl2_1/Jaspar

Match Rank:5
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----GCTGCTGCWA--
NNNNAGCAGCTGCTGAN
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A C T G A G T C A G C T A C T G A G T C G C A T C T G A A C G T A C G T
G T A C C G T A C T A G A C G T T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T C A G T G C A T C A G

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:6
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----GCTGCTGCWA
AGCAGCTGCTNN--
 A C G T A C G T A C G T A C G T A C T G A G T C A C G T A C T G A G T C A G C T A C T G A G T C G C A T C T G A
C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A T C G A G T C A C G T A C G T

Ascl2/MA0816.1/Jaspar

Match Rank:7
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GCTGCTGCWA
AGCAGCTGCT-
 A C G T A C T G A G T C A C G T A C T G A G T C A G C T A C T G A G T C G C A T C T G A
C T G A T C A G T G A C C G T A A C T G T A G C C G A T C A T G A G T C A G C T A C G T

ZNF341/MA1655.1/Jaspar

Match Rank:8
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---GCTGCTGCWA
NNGGCTGTTCCN-
 A C G T A C G T A C G T A C T G A G T C A C G T A C T G A G T C A G C T A C T G A G T C G C A T C T G A
A T C G A G C T C A T G T A C G T A G C A G C T T A C G G A C T A C G T A T G C G A T C G T A C A C G T

ASCL1/MA1100.2/Jaspar

Match Rank:9
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GCTGCTGCWA
GGCAGCTGCC-
 A C G T A C T G A G T C A C G T A C T G A G T C A G C T A C T G A G T C G C A T C T G A
T C A G T C A G A G T C G C T A A T C G T A G C C A G T C T A G A G T C A G T C A C G T

MYOG/MA0500.2/Jaspar

Match Rank:10
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GCTGCTGCWA
NNGCAGCTGCNN
 A C G T A C G T A C T G A G T C A C G T A C T G A G T C A G C T A C T G A G T C G C A T C T G A
T A G C C T G A T C A G A G T C T C G A A C T G T G A C A G C T T C A G A G T C G A C T A T C G