Information for 4-ATGCTYAATG (Motif 4)

C G T A C G A T A C T G A G T C C G A T G A T C C G T A C T G A G A C T C T A G
Reverse Opposite:
G A T C C T G A G A C T A C G T C T A G C G T A A C T G G T A C C G T A A C G T
p-value:1e-7
log p-value:-1.830e+01
Information Content per bp:1.735
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif2725.5
Percentage of Background Sequences with motif6.04%
Average Position of motif in Targets482.7 +/- 299.4bp
Average Position of motif in Background476.9 +/- 325.8bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.38
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0148.1_Pou3f3/Jaspar

Match Rank:1
Score:0.72
Offset:-5
Orientation:forward strand
Alignment:-----ATGCTYAATG--
AAAATATGCATAATAAA
 A C G T A C G T A C G T A C G T A C G T C G T A C G A T A C T G A G T C C G A T G A T C C G T A C T G A G A C T C T A G A C G T A C G T
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A

POU5F1/MA1115.1/Jaspar

Match Rank:2
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--ATGCTYAATG
ATATGCAAATT-
 A C G T A C G T C G T A C G A T A C T G A G T C C G A T G A T C C G T A C T G A G A C T C T A G
C G T A G C A T T C G A G A C T C T A G A G T C G C T A C T G A G C T A G C A T C A G T A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-ATGCTYAATG-
TATGCWAATBAV
 A C G T C G T A C G A T A C T G A G T C C G A T G A T C C G T A C T G A G A C T C T A G A C G T
G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

POU2F1/MA0785.1/Jaspar

Match Rank:4
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---ATGCTYAATG
AATATGCAAATT-
 A C G T A C G T A C G T C G T A C G A T A C T G A G T C C G A T G A T C C G T A C T G A G A C T C T A G
G C T A C G T A G A C T C G T A A G C T C A T G A G T C C G T A C T G A C G T A C G A T C A G T A C G T

POU3F1/MA0786.1/Jaspar

Match Rank:5
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--ATGCTYAATG
TTATGCAAATTA
 A C G T A C G T C G T A C G A T A C T G A G T C C G A T G A T C C G T A C T G A G A C T C T A G
C G A T G C A T C T G A G A C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A

POU5F1B/MA0792.1/Jaspar

Match Rank:6
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-ATGCTYAATG
TATGCAAAT--
 A C G T C G T A C G A T A C T G A G T C C G A T G A T C C G T A C T G A G A C T C T A G
G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T A C G T A C G T

PH0144.1_Pou2f2/Jaspar

Match Rank:7
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----ATGCTYAATG--
TTGTATGCAAATTAGA
 A C G T A C G T A C G T A C G T C G T A C G A T A C T G A G T C C G A T G A T C C G T A C T G A G A C T C T A G A C G T A C G T
A G C T G C A T C A T G G C A T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A C T A G T G C A

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:8
Score:0.67
Offset:0
Orientation:forward strand
Alignment:ATGCTYAATG--
ATGCATAATTCA
 C G T A C G A T A C T G A G T C C G A T G A T C C G T A C T G A G A C T C T A G A C G T A C G T
G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A

POU3F3/MA0788.1/Jaspar

Match Rank:9
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---ATGCTYAATG
ATTATGCTAATTT
 A C G T A C G T A C G T C G T A C G A T A C T G A G T C C G A T G A T C C G T A C T G A G A C T C T A G
C G T A C G A T C G A T C G T A A C G T C A T G A G T C G C A T C G T A C T G A G C A T C G A T C G A T

PH0145.1_Pou2f3/Jaspar

Match Rank:10
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----ATGCTYAATG--
TTGTATGCAAATTAGA
 A C G T A C G T A C G T A C G T C G T A C G A T A C T G A G T C C G A T G A T C C G T A C T G A G A C T C T A G A C G T A C G T
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A