Information for 2-GCCAAGGAGC (Motif 2)

A T C G A G T C A G T C C G T A C G T A A C T G A C T G C G T A C A T G A T G C
Reverse Opposite:
T A C G G T A C G C A T A G T C A G T C C G A T A C G T T C A G A C T G A T G C
p-value:1e-9
log p-value:-2.187e+01
Information Content per bp:1.838
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif29.17%
Number of Background Sequences with motif1488.8
Percentage of Background Sequences with motif3.30%
Average Position of motif in Targets513.9 +/- 337.5bp
Average Position of motif in Background565.4 +/- 280.9bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.21
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.2/Jaspar

Match Rank:1
Score:0.75
Offset:-3
Orientation:reverse strand
Alignment:---GCCAAGGAGC
NNTGCCAAGNN--
 A C G T A C G T A C G T A T C G A G T C A G T C C G T A C G T A A C T G A C T G C G T A C A T G A T G C
G C A T T A G C G C A T C T A G G T A C A G T C C G T A T G C A A C T G C G A T C T G A A C G T A C G T

NFYB/MA0502.2/Jaspar

Match Rank:2
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---GCCAAGGAGC
NTGGCCAATGAG-
 A C G T A C G T A C G T A T C G A G T C A G T C C G T A C G T A A C T G A C T G C G T A C A T G A T G C
A G T C A C G T C T A G T C A G G A T C G T A C G T C A T C G A C G A T T A C G T C G A T A C G A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---GCCAAGGAGC
CGTGCCAAG----
 A C G T A C G T A C G T A T C G A G T C A G T C C G T A C G T A A C T G A C T G C G T A C A T G A T G C
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:4
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---GCCAAGGAGC
GGTGCCAAGT---
 A C G T A C G T A C G T A T C G A G T C A G T C C G T A C G T A A C T G A C T G C G T A C A T G A T G C
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:5
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GCCAAGGAGC
AGCCAATCGG-
 A C G T A T C G A G T C A G T C C G T A C G T A A C T G A C T G C G T A C A T G A T G C
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:6
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GCCAAGGAGC
ACTAGCCAATCA--
 A C G T A C G T A C G T A C G T A T C G A G T C A G T C C G T A C G T A A C T G A C T G C G T A C A T G A T G C
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GCCAAGGAGC
TTGCCAAG----
 A C G T A C G T A T C G A G T C A G T C C G T A C G T A A C T G A C T G C G T A C A T G A T G C
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T

POL013.1_MED-1/Jaspar

Match Rank:8
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:GCCAAGGAGC
----CGGAGC
 A T C G A G T C A G T C C G T A C G T A A C T G A C T G C G T A C A T G A T G C
A C G T A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C

HLTF/MA0109.1/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GCCAAGGAGC
NNATAAGGNN-
 A C G T A T C G A G T C A G T C C G T A C G T A A C T G A C T G C G T A C A T G A T G C
C G T A A C G T G T C A G C A T C G T A C G T A A C T G A C T G C G A T G C A T A C G T

NR5A1/MA1540.1/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GCCAAGGAGC-
GTCAAGGTCAC
 A T C G A G T C A G T C C G T A C G T A A C T G A C T G C G T A C A T G A T G C A C G T
A C T G G A C T A T G C C T G A C G T A A C T G A C T G G A C T A G T C C T G A G A T C