Information for 11-GGAGACGCGC (Motif 11)

A C T G T C A G C G T A A C T G C G T A A T G C A T C G T G A C A C T G A T G C
Reverse Opposite:
A T C G T G A C A C T G A T G C A T C G G C A T A G T C A C G T A G T C A G T C
p-value:1e-5
log p-value:-1.305e+01
Information Content per bp:1.839
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif20.83%
Number of Background Sequences with motif1421.3
Percentage of Background Sequences with motif3.15%
Average Position of motif in Targets693.2 +/- 239.2bp
Average Position of motif in Background657.2 +/- 266.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.60
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GGAGACGCGC
CCAGACRSVB
 A C T G T C A G C G T A A C T G C G T A A T G C A T C G T G A C A C T G A T G C
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:2
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------GGAGACGCGC-
CTACTTGGATACGGAAT
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G T C A G C G T A A C T G C G T A A T G C A T C G T G A C A C T G A T G C A C G T
A T G C A C G T T C G A A T G C C A G T G A C T T C A G A C T G C G T A A C G T C G T A G A T C T A C G T A C G C G T A C G T A G C A T

PB0203.1_Zfp691_2/Jaspar

Match Rank:3
Score:0.59
Offset:-6
Orientation:reverse strand
Alignment:------GGAGACGCGC-
NTNNNAGGAGTCTCNTN
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G T C A G C G T A A C T G C G T A A T G C A T C G T G A C A C T G A T G C A C G T
A T C G C A G T A C G T G C T A C T A G C T G A A C T G A C T G C G T A A T C G A G C T G T A C G C A T T G A C T A C G G A C T G T C A

PB0199.1_Zfp161_2/Jaspar

Match Rank:4
Score:0.59
Offset:3
Orientation:forward strand
Alignment:GGAGACGCGC-------
---GCCGCGCAGTGCGT
 A C T G T C A G C G T A A C T G C G T A A T G C A T C G T G A C A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A T G G A T C A G T C T A C G G A T C C T A G T G A C G T C A C T A G A C G T C T A G G T A C T C A G A G C T

PB0008.1_E2F2_1/Jaspar

Match Rank:5
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GGAGACGCGC---
ATAAAGGCGCGCGAT
 A C G T A C G T A C T G T C A G C G T A A C T G C G T A A T G C A T C G T G A C A C T G A T G C A C G T A C G T A C G T
C T G A G C A T C G T A G C T A C T G A T A C G A T C G T G A C A T C G A T G C A T C G G A T C T A C G G C T A G C A T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GGAGACGCGC
CCAGACAG--
 A C T G T C A G C G T A A C T G C G T A A T G C A T C G T G A C A C T G A T G C
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T

ZSCAN29/MA1602.1/Jaspar

Match Rank:7
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----GGAGACGCGC
NCNGTGTAGACG---
 A C G T A C G T A C G T A C G T A C G T A C T G T C A G C G T A A C T G C G T A A T G C A T C G T G A C A C T G A T G C
A T G C G A T C A G T C T A C G A G C T C T A G C A G T C T G A A C T G T C G A A G T C T C A G A C G T A C G T A C G T

MAZ/MA1522.1/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GGAGACGCGC
GGGGAGGGGNN-
 A C G T A C G T A C T G T C A G C G T A A C T G C G T A A T G C A T C G T G A C A C T G A T G C
T C A G T C A G A T C G A C T G G T C A A T C G A T C G A T C G T A C G T A G C T A C G A C G T

PB0009.1_E2F3_1/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GGAGACGCGC---
ATAAGGGCGCGCGAT
 A C G T A C G T A C T G T C A G C G T A A C T G C G T A A T G C A T C G T G A C A C T G A T G C A C G T A C G T A C G T
T C G A G C A T C G T A G C T A C T A G T A C G T A C G T A G C A T C G A T G C A T C G G A T C A T C G G C T A G C A T

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:10
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GGAGACGCGC
GGGTACGTGC
 A C T G T C A G C G T A A C T G C G T A A T G C A T C G T G A C A C T G A T G C
C T A G A T C G T C A G C A G T C T G A A T G C A C T G A G C T A C T G G T A C