Information for 6-NAAARAGGGC (Motif 6)

C A G T C G T A T C G A C T G A C T A G T G C A A C T G A C T G C A T G G T A C
Reverse Opposite:
C A T G G T A C T G A C T G A C A C G T G A T C G A C T A G C T G C A T G T C A
p-value:1e-12
log p-value:-2.876e+01
Information Content per bp:1.509
Number of Target Sequences with motif214.0
Percentage of Target Sequences with motif3.78%
Number of Background Sequences with motif877.3
Percentage of Background Sequences with motif2.12%
Average Position of motif in Targets536.1 +/- 286.2bp
Average Position of motif in Background537.4 +/- 295.3bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORC/MA1151.1/Jaspar

Match Rank:1
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-NAAARAGGGC-
ATAAGTAGGTCA
 A C G T C A G T C G T A T C G A C T G A C T A G T G C A A C T G A C T G C A T G G T A C A C G T
C T G A C G A T G C T A C G T A A C T G A C G T T C G A C A T G C T A G A C G T A G T C C T G A

RORB/MA1150.1/Jaspar

Match Rank:2
Score:0.61
Offset:1
Orientation:forward strand
Alignment:NAAARAGGGC--
-AATTAGGTCAC
 C A G T C G T A T C G A C T G A C T A G T G C A A C T G A C T G C A T G G T A C A C G T A C G T
A C G T C G T A G C T A C G A T A C G T C T G A A C T G C T A G A G C T G A T C C T G A G A T C

PB0146.1_Mafk_2/Jaspar

Match Rank:3
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-NAAARAGGGC----
GAAAAAATTGCAAGG
 A C G T C A G T C G T A T C G A C T G A C T A G T G C A A C T G A C T G C A T G G T A C A C G T A C G T A C G T A C G T
T C A G G T C A T C G A C T G A C T G A G C T A G C T A C A G T A G C T C A T G A G T C T G C A G T C A A T C G T C A G

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:4
Score:0.61
Offset:1
Orientation:forward strand
Alignment:NAAARAGGGC-
-AAYTAGGTCA
 C A G T C G T A T C G A C T G A C T A G T G C A A C T G A C T G C A T G G T A C A C G T
A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:5
Score:0.61
Offset:1
Orientation:forward strand
Alignment:NAAARAGGGC-
-AAYTAGGTCA
 C A G T C G T A T C G A C T G A C T A G T G C A A C T G A C T G C A T G G T A C A C G T
A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

NR4A1/MA1112.2/Jaspar

Match Rank:6
Score:0.60
Offset:1
Orientation:forward strand
Alignment:NAAARAGGGC---
-TTAAAGGTCAAA
 C A G T C G T A T C G A C T G A C T A G T G C A A C T G A C T G C A T G G T A C A C G T A C G T A C G T
A C G T C A G T G C A T C T G A C T G A T C G A C A T G C A T G A C G T A G T C C T G A T C G A C T G A

YY1/MA0095.2/Jaspar

Match Rank:7
Score:0.60
Offset:1
Orientation:forward strand
Alignment:NAAARAGGGC---
-CAAGATGGCGGC
 C A G T C G T A T C G A C T G A C T A G T G C A A C T G A C T G C A T G G T A C A C G T A C G T A C G T
A C G T T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C

RORA/MA0071.1/Jaspar

Match Rank:8
Score:0.60
Offset:1
Orientation:forward strand
Alignment:NAAARAGGGC-
-ATCAAGGTCA
 C A G T C G T A T C G A C T G A C T A G T G C A A C T G A C T G C A T G G T A C A C G T
A C G T C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A

ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer

Match Rank:9
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---NAAARAGGGC
RHHCAGAGAGGB-
 A C G T A C G T A C G T C A G T C G T A T C G A C T G A C T A G T G C A A C T G A C T G C A T G G T A C
T C A G G T C A G C T A A G T C C G T A A T C G T C G A T C A G C G T A A C T G A C T G A C T G A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:10
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--NAAARAGGGC--
TATAAGTAGGTCAA
 A C G T A C G T C A G T C G T A T C G A C T G A C T A G T G C A A C T G A C T G C A T G G T A C A C G T A C G T
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A