Information for 5-CATAATGCAC (Motif 5)

G A T C C G T A C G A T C G T A G T C A A G C T A C T G T A G C G C T A A G T C
Reverse Opposite:
T C A G C G A T A T C G A G T C T C G A A C G T A C G T G C T A A C G T C T A G
p-value:1e-12
log p-value:-2.889e+01
Information Content per bp:1.833
Number of Target Sequences with motif146.0
Percentage of Target Sequences with motif2.58%
Number of Background Sequences with motif517.6
Percentage of Background Sequences with motif1.25%
Average Position of motif in Targets505.2 +/- 280.1bp
Average Position of motif in Background514.7 +/- 284.2bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF143/MA0088.2/Jaspar

Match Rank:1
Score:0.77
Offset:-4
Orientation:forward strand
Alignment:----CATAATGCAC--
TACCCACAATGCATTG
 A C G T A C G T A C G T A C G T G A T C C G T A C G A T C G T A G T C A A G C T A C T G T A G C G C T A A G T C A C G T A C G T
A G C T C G T A G T A C G T A C A G T C C T G A A G T C T C G A C T G A C G A T T C A G A G T C G T C A G A C T G A C T C T A G

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:2
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---CATAATGCAC
ATGCATAATTCA-
 A C G T A C G T A C G T G A T C C G T A C G A T C G T A G T C A A G C T A C T G T A G C G C T A A G T C
G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A A C G T

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:3
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---CATAATGCAC--
ATGCATWATGCATRW
 A C G T A C G T A C G T G A T C C G T A C G A T C G T A G T C A A G C T A C T G T A G C G C T A A G T C A C G T A C G T
C G T A A C G T A C T G G T A C C G T A A C G T C G T A C G T A A C G T A C T G A G T C C G T A A C G T C T G A G C A T

PB0176.1_Sox5_2/Jaspar

Match Rank:4
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CATAATGCAC--
TATCATAATTAAGGA
 A C G T A C G T A C G T G A T C C G T A C G A T C G T A G T C A A G C T A C T G T A G C G C T A A G T C A C G T A C G T
C G A T G C T A C G A T A G T C C T G A C A G T T G C A G C T A G C A T G A C T C G T A T G C A T A C G C A T G C G T A

SOX13/MA1120.1/Jaspar

Match Rank:5
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CATAATGCAC
AAACAATGGCA
 A C G T G A T C C G T A C G A T C G T A G T C A A G C T A C T G T A G C G C T A A G T C
C T G A T C G A C T G A A G T C G C T A C T G A G C A T C T A G T C A G T G A C G C T A

FOXH1/MA0479.1/Jaspar

Match Rank:6
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CATAATGCAC-
TCCAATCCACA
 G A T C C G T A C G A T C G T A G T C A A G C T A C T G T A G C G C T A A G T C A C G T
A G C T A G T C T A G C C G T A C G T A A C G T G T A C G T A C C G T A A G T C C G T A

SOX2/MA0143.4/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CATAATGCAC
AAACAATGGAA
 A C G T G A T C C G T A C G A T C G T A G T C A A G C T A C T G T A G C G C T A A G T C
C G T A C G T A G C T A G A T C G C T A T C G A C G A T C T A G C T A G C G T A G C T A

PBX2/MA1113.2/Jaspar

Match Rank:8
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CATAATGCAC-
GTCATAAATCATT
 A C G T A C G T G A T C C G T A C G A T C G T A G T C A A G C T A C T G T A G C G C T A A G T C A C G T
T C A G G A C T G T A C C T G A A G C T G T C A G C T A G C T A G C A T G A T C G C T A G A C T G C A T

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CATAATGCAC---
-SSAATCCACANN
 G A T C C G T A C G A T C G T A G T C A A G C T A C T G T A G C G C T A A G T C A C G T A C G T A C G T
A C G T A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C

PH0148.1_Pou3f3/Jaspar

Match Rank:10
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CATAATGCAC-----
TNNATTATGCATANNTT
 A C G T A C G T G A T C C G T A C G A T C G T A G T C A A G C T A C T G T A G C G C T A A G T C A C G T A C G T A C G T A C G T A C G T
G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T