Information for 4-TATTCAAGAC (Motif 4)

C G A T G C T A A C G T G C A T G A T C T C G A G C T A T A C G C G T A A T G C
Reverse Opposite:
T A C G G C A T A T G C C G A T A G C T C T A G C G T A C G T A C G A T C G T A
p-value:1e-12
log p-value:-2.895e+01
Information Content per bp:1.599
Number of Target Sequences with motif189.0
Percentage of Target Sequences with motif3.34%
Number of Background Sequences with motif740.7
Percentage of Background Sequences with motif1.79%
Average Position of motif in Targets442.1 +/- 279.5bp
Average Position of motif in Background466.5 +/- 279.9bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0178.1_Sox8_2/Jaspar

Match Rank:1
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-TATTCAAGAC---
ACATTCATGACACG
 A C G T C G A T G C T A A C G T G C A T G A T C T C G A G C T A T A C G C G T A A T G C A C G T A C G T A C G T
C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

LIN54/MA0619.1/Jaspar

Match Rank:2
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TATTCAAGAC
NATTCAAAT-
 C G A T G C T A A C G T G C A T G A T C T C G A G C T A T A C G C G T A A T G C
C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T

HOXC10/MA0905.1/Jaspar

Match Rank:3
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TATTCAAGAC
NTTTTACGAC
 C G A T G C T A A C G T G C A T G A T C T C G A G C T A T A C G C G T A A T G C
C G T A C G A T G C A T G C A T C G A T C G T A G A T C C A T G C T G A A G T C

Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:4
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:TATTCAAGAC-
-TTTTATGGCB
 C G A T G C T A A C G T G C A T G A T C T C G A G C T A T A C G C G T A A T G C A C G T
A C G T G C A T C G A T G C A T G A C T G C T A A G C T C A T G C T A G A T G C A G T C

HOXD11/MA0908.1/Jaspar

Match Rank:5
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TATTCAAGAC
NTTTTACGAC
 C G A T G C T A A C G T G C A T G A T C T C G A G C T A T A C G C G T A A T G C
C G A T C G A T C G A T C G A T C G A T C G T A A G T C C T A G C G T A A G T C

PH0065.1_Hoxc10/Jaspar

Match Rank:6
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--TATTCAAGAC----
ANNTTTTACGACNTNN
 A C G T A C G T C G A T G C T A A C G T G C A T G A T C T C G A G C T A T A C G C G T A A T G C A C G T A C G T A C G T A C G T
T G C A T A G C C T A G G C A T C A G T C G A T C G A T C G T A A G T C A C T G C T G A A G T C G A C T G C A T G C A T C G T A

HOXB9/MA1503.1/Jaspar

Match Rank:7
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TATTCAAGAC
NTTTTACGAC
 C G A T G C T A A C G T G C A T G A T C T C G A G C T A T A C G C G T A A T G C
C T G A C G A T C A G T A C G T C G A T G T C A A G T C A C T G C T G A A G T C

PH0067.1_Hoxc12/Jaspar

Match Rank:8
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---TATTCAAGAC----
GNNNTTTTACGACCTNA
 A C G T A C G T A C G T C G A T G C T A A C G T G C A T G A T C T C G A G C T A T A C G C G T A A T G C A C G T A C G T A C G T A C G T
C T A G G C T A T C G A C G T A C G A T C A G T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C A G C T C G T A C T G A

HOXC11/MA0651.1/Jaspar

Match Rank:9
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TATTCAAGAC-
NTTTTACGACC
 C G A T G C T A A C G T G C A T G A T C T C G A G C T A T A C G C G T A A T G C A C G T
C G T A C G A T C A G T C G A T G C A T C G T A A G T C C T A G C T G A A G T C G A T C

PH0076.1_Hoxd11/Jaspar

Match Rank:10
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---TATTCAAGAC----
ANNATTTTACGACNTNA
 A C G T A C G T A C G T C G A T G C T A A C G T G C A T G A T C T C G A G C T A T A C G C G T A A T G C A C G T A C G T A C G T A C G T
G T C A C T A G C T A G C G T A C G A T C A G T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C G A C T C G A T C T G A