Information for 3-TCAAGYCGCG (Motif 3)

A C G T T A G C C T G A C G T A C T A G G A C T A T G C A C T G A G T C A T C G
Reverse Opposite:
T A G C T C A G T G A C A T C G C T G A A G T C A C G T A G C T A T C G C G T A
p-value:1e-12
log p-value:-2.895e+01
Information Content per bp:1.749
Number of Target Sequences with motif121.0
Percentage of Target Sequences with motif2.14%
Number of Background Sequences with motif393.0
Percentage of Background Sequences with motif0.95%
Average Position of motif in Targets617.1 +/- 289.7bp
Average Position of motif in Background620.2 +/- 266.9bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0111.1_Nkx2-2/Jaspar

Match Rank:1
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----TCAAGYCGCG--
NANTTTCAAGTGGTTAN
 A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T G A C G T A C T A G G A C T A T G C A C T G A G T C A T C G A C G T A C G T
G C T A T G C A G C A T G C A T A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G A T

NKX2-8/MA0673.1/Jaspar

Match Rank:2
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TCAAGYCGCG
NTCAAGTGG--
 A C G T A C G T T A G C C T G A C G T A C T A G G A C T A T G C A C T G A G T C A T C G
A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G A C G T A C G T

PH0171.1_Nkx2-1/Jaspar

Match Rank:3
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----TCAAGYCGCG--
AANTTCAAGTGGCTTN
 A C G T A C G T A C G T A C G T A C G T T A G C C T G A C G T A C T A G G A C T A T G C A C T G A G T C A T C G A C G T A C G T
C G T A C G T A C A G T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G T A G C G A C T A C G T T C G A

NKX2-3/MA0672.1/Jaspar

Match Rank:4
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TCAAGYCGCG
NTCAAGTGGN-
 A C G T A C G T T A G C C T G A C G T A C T A G G A C T A T G C A C T G A G T C A T C G
A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T A C G T

PH0113.1_Nkx2-4/Jaspar

Match Rank:5
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----TCAAGYCGCG--
AATTTCAAGTGGCTTN
 A C G T A C G T A C G T A C G T A C G T T A G C C T G A C G T A C T A G G A C T A T G C A C T G A G T C A T C G A C G T A C G T
C T G A C G T A C G A T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G A G T C G C A T G A C T C G T A

PH0114.1_Nkx2-5/Jaspar

Match Rank:6
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----TCAAGYCGCG--
AAATTCAAGTGGNTTN
 A C G T A C G T A C G T A C G T A C G T T A G C C T G A C G T A C T A G G A C T A T G C A C T G A G T C A T C G A C G T A C G T
C T G A C T G A C G T A A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T C G T A

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:7
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TCAAGYCGCG
CTYRAGTGSY-
 A C G T A C G T T A G C C T G A C G T A C T A G G A C T A T G C A C T G A G T C A T C G
A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C A C G T

ZBTB6/MA1581.1/Jaspar

Match Rank:8
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----TCAAGYCGCG
NNGGCTCAAGGNN--
 A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T G A C G T A C T A G G A C T A T G C A C T G A G T C A T C G
A T G C A C T G C T A G C A T G A G T C C A G T A T G C G T C A T C G A C A T G A T C G T C G A G T A C A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:9
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-TCAAGYCGCG
BTBRAGTGSN-
 A C G T A C G T T A G C C T G A C G T A C T A G G A C T A T G C A C T G A G T C A T C G
A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C A C G T

PB0008.1_E2F2_1/Jaspar

Match Rank:10
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-TCAAGYCGCG----
ATAAAGGCGCGCGAT
 A C G T A C G T T A G C C T G A C G T A C T A G G A C T A T G C A C T G A G T C A T C G A C G T A C G T A C G T A C G T
C T G A G C A T C G T A G C T A C T G A T A C G A T C G T G A C A T C G A T G C A T C G G A T C T A C G G C T A G C A T