Information for 8-AGAG (Motif 29)

C T G A A C T G C G T A C T A G
Reverse Opposite:
A G T C A C G T A G T C A G C T
p-value:1e-2
log p-value:-5.182e+00
Information Content per bp:1.948
Number of Target Sequences with motif5594.0
Percentage of Target Sequences with motif98.85%
Number of Background Sequences with motif40639.0
Percentage of Background Sequences with motif98.41%
Average Position of motif in Targets533.6 +/- 285.2bp
Average Position of motif in Background530.5 +/- 289.4bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)8.90
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:1
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---AGAG---
TTGAGTGSTT
 A C G T A C G T A C G T C T G A A C T G C G T A C T A G A C G T A C G T A C G T
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer

Match Rank:2
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----AGAG----
RHHCAGAGAGGB
 A C G T A C G T A C G T A C G T C T G A A C T G C G T A C T A G A C G T A C G T A C G T A C G T
T C A G G T C A G C T A A G T C C G T A A T C G T C G A T C A G C G T A A C T G A C T G A C T G

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:3
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----AGAG--
BTBRAGTGSN
 A C G T A C G T A C G T A C G T C T G A A C T G C G T A C T A G A C G T A C G T
A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:4
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----AGAG--
CTYRAGTGSY
 A C G T A C G T A C G T A C G T C T G A A C T G C G T A C T A G A C G T A C G T
A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C

PB0140.1_Irf6_2/Jaspar

Match Rank:5
Score:0.67
Offset:-7
Orientation:reverse strand
Alignment:-------AGAG----
NNNACCGAGAGTNNN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A A C T G C G T A C T A G A C G T A C G T A C G T A C G T
A T C G G A C T C A T G G T C A A G T C G A T C C T A G T C G A T A C G G T C A C A T G C G A T T C A G T A C G A C G T

PB0139.1_Irf5_2/Jaspar

Match Rank:6
Score:0.65
Offset:-7
Orientation:forward strand
Alignment:-------AGAG----
TTGACCGAGAATTCC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A A C T G C G T A C T A G A C G T A C G T A C G T A C G T
A G C T G C A T C T A G C G T A G A C T G T A C C T A G C T G A A T C G C G T A C T G A G A C T G A C T A G T C T A G C

PRDM1/MA0508.3/Jaspar

Match Rank:7
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-AGAG------
NAGAGAAAGNA
 A C G T C T G A A C T G C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T
C T G A C T G A C A T G G C T A C A T G G C T A C G T A G C T A C A T G C G T A C T G A

PB0138.1_Irf4_2/Jaspar

Match Rank:8
Score:0.61
Offset:-7
Orientation:reverse strand
Alignment:-------AGAG----
GNNACCGAGAATNNN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A A C T G C G T A C T A G A C G T A C G T A C G T A C G T
A T C G G T A C C T G A G C T A A G T C A G T C C A T G T C G A C A T G G C T A C T G A C G A T T C G A A T G C A G C T

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------AGAG--
GRTGMTRGAGCC
 A C G T A C G T A C G T A C G T A C G T A C G T C T G A A C T G C G T A C T A G A C G T A C G T
A T C G T C G A G A C T A T C G T G A C A C G T C T A G A C T G C G T A A C T G A G T C G T A C

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:10
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----AGAG---
CTTGAGTGGCT
 A C G T A C G T A C G T A C G T C T G A A C T G C G T A C T A G A C G T A C G T A C G T
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T