Information for 4-ATRA (Motif 27)

G T C A C G A T T C A G C G T A
Reverse Opposite:
A C G T A G C T G C T A A C G T
p-value:1e-4
log p-value:-1.086e+01
Information Content per bp:1.676
Number of Target Sequences with motif5518.0
Percentage of Target Sequences with motif97.51%
Number of Background Sequences with motif39841.2
Percentage of Background Sequences with motif96.48%
Average Position of motif in Targets469.7 +/- 279.9bp
Average Position of motif in Background468.9 +/- 280.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)7.84
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GATA5/MA0766.2/Jaspar

Match Rank:1
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---ATRA---
CAGATAAGGA
 A C G T A C G T A C G T G T C A C G A T T C A G C G T A A C G T A C G T A C G T
A T G C G C T A A C T G C G T A A C G T C G T A C G T A A T C G T C A G T G C A

Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer

Match Rank:2
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----ATRA--
NBWGATAAGR
 A C G T A C G T A C G T A C G T G T C A C G A T T C A G C G T A A C G T A C G T
T A C G A T G C G C T A A C T G C G T A A C G T C G T A C T G A T A C G T C G A

GATA3/MA0037.3/Jaspar

Match Rank:3
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--ATRA--
AGATAAGA
 A C G T A C G T G T C A C G A T T C A G C G T A A C G T A C G T
G C T A A C T G C G T A A C G T G C T A C T G A T A C G T C G A

Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:4
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----ATRA--
RGCAATNAAA
 A C G T A C G T A C G T A C G T G T C A C G A T T C A G C G T A A C G T A C G T
C T A G T A C G G A T C G T C A T G C A A C G T T G C A G C T A T C G A T G C A

Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer

Match Rank:5
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----ATRA--
NVAGATAAGR
 A C G T A C G T A C G T A C G T G T C A C G A T T C A G C G T A A C G T A C G T
T C A G T A G C G C T A C A T G C T G A G C A T C G T A C T G A T A C G T C G A

Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer

Match Rank:6
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---ATRA---
NAGATAAGNN
 A C G T A C G T A C G T G T C A C G A T T C A G C G T A A C G T A C G T A C G T
T A C G G C T A A C T G C G T A A C G T C G T A C T G A T A C G T C A G T C G A

Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:7
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----ATRA--
GGCMATGAAA
 A C G T A C G T A C G T A C G T G T C A C G A T T C A G C G T A A C G T A C G T
C T A G T A C G G A T C G T C A T C G A A C G T T C A G C G T A C G T A C G T A

GATA2/MA0036.3/Jaspar

Match Rank:8
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----ATRA---
NNAGATAAGNN
 A C G T A C G T A C G T A C G T G T C A C G A T T C A G C G T A A C G T A C G T A C G T
C T G A T C G A C G T A T C A G C G T A G C A T C G T A C G T A T C A G T C G A G C T A

Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer

Match Rank:9
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---ATRA---
CAGATAAGGN
 A C G T A C G T A C G T G T C A C G A T T C A G C G T A A C G T A C G T A C G T
T A G C G C T A A C T G C G T A A C G T C G T A C G T A T A C G T C A G T C G A

TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer

Match Rank:10
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--ATRA----
AGATAAGANN
 A C G T A C G T G T C A C G A T T C A G C G T A A C G T A C G T A C G T A C G T
C G T A A C T G C G T A A C G T C G T A C T G A T C A G T G C A A G C T T G A C