Information for 21-CGTGCATCAG (Motif 21)

A G T C C A T G G C A T A T C G G A T C T G C A G C A T G A T C G C T A C T A G
Reverse Opposite:
G A T C C G A T C T A G C G T A A C G T C T A G T A G C C G T A G T A C T C A G
p-value:1e-9
log p-value:-2.187e+01
Information Content per bp:1.571
Number of Target Sequences with motif124.0
Percentage of Target Sequences with motif2.19%
Number of Background Sequences with motif464.9
Percentage of Background Sequences with motif1.13%
Average Position of motif in Targets576.2 +/- 260.7bp
Average Position of motif in Background558.9 +/- 283.3bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:1
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CGTGCATCAG
ATTGCATCAK
 A G T C C A T G G C A T A T C G G A T C T G C A G C A T G A T C G C T A C T A G
T C G A A C G T A C G T C T A G A G T C T C G A G C A T G T A C C T G A A C G T

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:2
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CGTGCATCAG
ATTGCATCAT
 A G T C C A T G G C A T A T C G G A T C T G C A G C A T G A T C G C T A C T A G
T C G A G C A T A C G T C T A G G T A C T C G A G C A T T G A C T C G A A C G T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:3
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CGTGCATCAG
RTACGTGC-----
 A C G T A C G T A C G T A G T C C A T G G C A T A T C G G A T C T G C A G C A T G A T C G C T A C T A G
C T G A C A G T C T G A A G T C C T A G G A C T A T C G G T A C A C G T A C G T A C G T A C G T A C G T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:4
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CGTGCATCAG
GGACGTGC-----
 A C G T A C G T A C G T A G T C C A T G G C A T A T C G G A T C T G C A G C A T G A T C G C T A C T A G
T A C G A C T G T C G A A G T C A C T G A C G T A C T G T A G C A C G T A C G T A C G T A C G T A C G T

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:5
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CGTGCATCAG
TACGTGCV----
 A C G T A C G T A G T C C A T G G C A T A T C G G A T C T G C A G C A T G A T C G C T A C T A G
A C G T C T G A G A T C A T C G G A C T T C A G G T A C T A G C A C G T A C G T A C G T A C G T

HIF1A/MA1106.1/Jaspar

Match Rank:6
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CGTGCATCAG
GTACGTGCCC---
 A C G T A C G T A C G T A G T C C A T G G C A T A T C G G A T C T G C A G C A T G A T C G C T A C T A G
T A C G A G C T C G T A A G T C C T A G A G C T T C A G G T A C A T G C A T G C A C G T A C G T A C G T

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CGTGCATCAG-
-TTGCAACATN
 A G T C C A T G G C A T A T C G G A T C T G C A G C A T G A T C G C T A C T A G A C G T
A C G T C A G T A C G T C T A G A G T C G T C A C G T A G A T C G C T A A G C T G A T C

ATF4/MA0833.2/Jaspar

Match Rank:8
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CGTGCATCAG--
NNATTGCATCATNN
 A C G T A C G T A G T C C A T G G C A T A T C G G A T C T G C A G C A T G A T C G C T A C T A G A C G T A C G T
C G A T C A G T T C G A G C A T C A G T C T A G G A T C T C G A G A C T G T A C C G T A A G C T G A C T G A C T

HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer

Match Rank:9
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CGTGCATCAG
YCATCMATCA-
 A C G T A G T C C A T G G C A T A T C G G A T C T G C A G C A T G A T C G C T A C T A G
G A T C G T A C C T G A A C G T G A T C G T C A C T G A A C G T G A T C G C T A A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:10
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CGTGCATCAG
TTGCGTGCVA---
 A C G T A C G T A C G T A G T C C A T G G C A T A T C G G A T C T G C A G C A T G A T C G C T A C T A G
A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A A C G T A C G T A C G T