Information for 19-TCTACCCAAG (Motif 20)

C G A T T A G C A C G T T G C A A G T C T G A C T G A C T G C A C T G A A T C G
Reverse Opposite:
T A G C A G C T A C G T A C T G A C T G A C T G A C G T T G C A A T C G C G T A
p-value:1e-9
log p-value:-2.239e+01
Information Content per bp:1.694
Number of Target Sequences with motif220.0
Percentage of Target Sequences with motif3.89%
Number of Background Sequences with motif986.7
Percentage of Background Sequences with motif2.39%
Average Position of motif in Targets489.9 +/- 273.0bp
Average Position of motif in Background527.5 +/- 279.6bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

EBF3/MA1637.1/Jaspar

Match Rank:1
Score:0.64
Offset:2
Orientation:forward strand
Alignment:TCTACCCAAG-----
--TTCCCAAGGGAAT
 C G A T T A G C A C G T T G C A A G T C T G A C T G A C T G C A C T G A A T C G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G C T T A G C G A T C G A T C G T C A C T G A T C A G C T A G T C A G T C G A T G C A G C A T

Ebf2/MA1604.1/Jaspar

Match Rank:2
Score:0.64
Offset:2
Orientation:forward strand
Alignment:TCTACCCAAG-----
--TTCCCAAGGGACT
 C G A T T A G C A C G T T G C A A G T C T G A C T G A C T G C A C T G A A T C G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G C T T A G C G A T C G A T C G T C A C T G A T C A G C T A G C T A G T C G A T G A C G A C T

PB0133.1_Hic1_2/Jaspar

Match Rank:3
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---TCTACCCAAG---
GGGTGTGCCCAAAAGG
 A C G T A C G T A C G T C G A T T A G C A C G T T G C A A G T C T G A C T G A C T G C A C T G A A T C G A C G T A C G T A C G T
C A T G A T C G C A T G C A G T C T A G A C G T C T A G A G T C A G T C G T A C G T C A C G T A C G T A G T C A C T A G T A C G

PB0157.1_Rara_2/Jaspar

Match Rank:4
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---TCTACCCAAG---
NNCNTGACCCCGCTCT
 A C G T A C G T A C G T C G A T T A G C A C G T T G C A A G T C T G A C T G A C T G C A C T G A A T C G A C G T A C G T A C G T
A C G T T G C A T G A C C A G T G A C T T C A G C G T A G T A C G T A C A T G C T A G C T C A G G T A C C A G T G T A C C A G T

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:5
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--TCTACCCAAG
GGACCACCCACG
 A C G T A C G T C G A T T A G C A C G T T G C A A G T C T G A C T G A C T G C A C T G A A T C G
C T A G A T C G T C G A G T A C A G T C G C T A A T G C G T A C G A T C C G T A T A G C T C A G

NKX2-2/MA1645.1/Jaspar

Match Rank:6
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--TCTACCCAAG--
TAACCACTCAAGAA
 A C G T A C G T C G A T T A G C A C G T T G C A A G T C T G A C T G A C T G C A C T G A A T C G A C G T A C G T
G A C T G C T A C G T A T G A C G A T C G C T A G T A C G C A T A T G C G T C A T C G A T C A G G C T A G C T A

PH0026.1_Duxbl/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:forward strand
Alignment:TCTACCCAAG--------
-CGACCCAATCAACGGTG
 C G A T T A G C A C G T T G C A A G T C T G A C T G A C T G C A C T G A A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A G T C C T A G C T G A A G T C A G T C A G T C G T C A G T C A A G C T A G T C C G T A C T G A A G T C T A C G T C A G G C A T T A C G

POL004.1_CCAAT-box/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:forward strand
Alignment:TCTACCCAAG--
ACTAGCCAATCA
 C G A T T A G C A C G T T G C A A G T C T G A C T G A C T G C A C T G A A T C G A C G T A C G T
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer

Match Rank:9
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TCTACCCAAG
AGACCACCCASR
 A C G T A C G T C G A T T A G C A C G T T G C A A G T C T G A C T G A C T G C A C T G A A T C G
C T G A A C T G T C G A T G A C G A T C G C T A T A G C T G A C G T A C C G T A T A G C T C A G

RBPJ/MA1116.1/Jaspar

Match Rank:10
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:TCTACCCAAG
NNTTCCCANN
 C G A T T A G C A C G T T G C A A G T C T G A C T G A C T G C A C T G A A T C G
A T G C A C G T C A G T G C A T T G A C T G A C A G T C C T G A A T C G T C A G