Information for 18-CAATACAAGA (Motif 19)

A G T C G T C A G T C A A C G T G C T A A T G C G C T A T G C A A C T G C T G A
Reverse Opposite:
A G C T A G T C A C G T C G A T T A C G C G A T T G C A A C G T C A G T A C T G
p-value:1e-9
log p-value:-2.275e+01
Information Content per bp:1.744
Number of Target Sequences with motif346.0
Percentage of Target Sequences with motif6.11%
Number of Background Sequences with motif1726.2
Percentage of Background Sequences with motif4.18%
Average Position of motif in Targets514.7 +/- 274.1bp
Average Position of motif in Background497.9 +/- 287.0bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Mecom/MA0029.1/Jaspar

Match Rank:1
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CAATACAAGA-----
-AAGATAAGATAACA
 A G T C G T C A G T C A A C G T G C T A A T G C G C T A T G C A A C T G C T G A A C G T A C G T A C G T A C G T A C G T
A C G T C T G A C G T A A C T G C G T A G A C T C G T A C T G A A C T G C G T A A G C T G C T A C T G A A C G T G T C A

HOXB13/MA0901.2/Jaspar

Match Rank:2
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CAATACAAGA-
AACCAATAAAATTT
 A C G T A C G T A C G T A G T C G T C A G T C A A C G T G C T A A T G C G C T A T G C A A C T G C T G A A C G T
C G T A C G T A G T A C G A T C G C T A C G T A A C G T C G T A G C T A G C T A G C T A G C A T G C A T G C A T

PB0183.1_Sry_2/Jaspar

Match Rank:3
Score:0.61
Offset:-8
Orientation:forward strand
Alignment:--------CAATACAAGA
TCACGGAACAATAGGTG-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T C A G T C A A C G T G C T A A T G C G C T A T G C A A C T G C T G A
G A C T G A T C C G T A G T A C C A T G T C A G T G C A C G T A A G T C C T G A C G T A G C A T C T G A C T A G T C A G G A C T T A C G A C G T

PB0106.1_Arid5a_2/Jaspar

Match Rank:4
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----CAATACAAGA---
CATACAATACGAAATAA
 A C G T A C G T A C G T A C G T A G T C G T C A G T C A A C G T G C T A A T G C G C T A T G C A A C T G C T G A A C G T A C G T A C G T
A T G C C T A G G A C T C G T A T G A C C G T A T G C A A C G T T G C A T A G C T A C G C T G A C T G A C G T A A G C T T C G A T C G A

CDX2/MA0465.2/Jaspar

Match Rank:5
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CAATACAAGA
AAGCAATAAAAA-
 A C G T A C G T A C G T A G T C G T C A G T C A A C G T G C T A A T G C G C T A T G C A A C T G C T G A
C T G A C G T A C T A G G A T C G T C A C T G A A G C T C G T A C G T A G C T A C G T A G C T A A C G T

Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer

Match Rank:6
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CAATACAAGA
RRTCAATA-----
 A C G T A C G T A C G T A G T C G T C A G T C A A C G T G C T A A T G C G C T A T G C A A C T G C T G A
C T A G C T G A A G C T G T A C C T G A C G T A A C G T C G T A A C G T A C G T A C G T A C G T A C G T

HOXA13/MA0650.2/Jaspar

Match Rank:7
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CAATACAAGA
CCCAATAAAAC-
 A C G T A C G T A G T C G T C A G T C A A C G T G C T A A T G C G C T A T G C A A C T G C T G A
T G A C T A G C A G T C G T C A C G T A A C G T C T G A C T G A C G T A G T C A G T A C A C G T

GATA6/MA1104.2/Jaspar

Match Rank:8
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CAATACAAGA---
NNAGATAAGATAN
 A G T C G T C A G T C A A C G T G C T A A T G C G C T A T G C A A C T G C T G A A C G T A C G T A C G T
C G T A C T G A C G T A C T A G C G T A G C A T C G T A C G T A T A C G T C G A C G A T C G T A C G T A

PB0066.1_Sox17_1/Jaspar

Match Rank:9
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----CAATACAAGA
ATAAACAATTAAACA
 A C G T A C G T A C G T A C G T A C G T A G T C G T C A G T C A A C G T G C T A A T G C G C T A T G C A A C T G C T G A
T G C A C G A T C T G A C G T A C G T A A G T C C G T A C G T A C G A T C G A T T C G A G C T A G C A T G A T C C G T A

PB0068.1_Sox1_1/Jaspar

Match Rank:10
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CAATACAAGA---
AATCAATTCAATAATT
 A C G T A C G T A C G T A G T C G T C A G T C A A C G T G C T A A T G C G C T A T G C A A C T G C T G A A C G T A C G T A C G T
G C A T C G T A C A G T G A T C G C T A G C T A G C A T C G A T T A G C G C T A G C T A G C A T C G T A G T C A C G A T A C G T