Information for 10-CTAAATGGGC (Motif 10)

T G A C A G C T G C T A C T G A C T G A G A C T A C T G T A C G A C T G G T A C
Reverse Opposite:
C A T G T G A C A T G C T G A C C T G A G A C T G A C T C G A T T C G A A C T G
p-value:1e-11
log p-value:-2.622e+01
Information Content per bp:1.650
Number of Target Sequences with motif411.0
Percentage of Target Sequences with motif7.26%
Number of Background Sequences with motif2061.6
Percentage of Background Sequences with motif4.99%
Average Position of motif in Targets510.4 +/- 276.1bp
Average Position of motif in Background510.8 +/- 273.9bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BARHL1/MA0877.2/Jaspar

Match Rank:1
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CTAAATGGGC
CTAAACGG--
 T G A C A G C T G C T A C T G A C T G A G A C T A C T G T A C G A C T G G T A C
T A G C C G A T C G T A G T C A C G T A A G T C C T A G C A T G A C G T A C G T

BARHL2/MA0635.1/Jaspar

Match Rank:2
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CTAAATGGGC
GCTAAACGGT-
 A C G T T G A C A G C T G C T A C T G A C T G A G A C T A C T G T A C G A C T G G T A C
T A C G G A T C C G A T C G T A C G T A C G T A G A T C C T A G T C A G G A C T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CTAAATGGGC
GTTAATGGCC
 T G A C A G C T G C T A C T G A C T G A G A C T A C T G T A C G A C T G G T A C
A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C

PH0089.1_Isx/Jaspar

Match Rank:4
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CTAAATGGGC--
ACTCCTAATTAGTCGT
 A C G T A C G T A C G T A C G T T G A C A G C T G C T A C T G A C T G A G A C T A C T G T A C G A C T G G T A C A C G T A C G T
G C T A T G A C A G C T T G A C G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C G T A G T C T A C G C G A T

PH0107.1_Msx2/Jaspar

Match Rank:5
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----CTAAATGGGC---
ANCGCTAATTGGTCTNN
 A C G T A C G T A C G T A C G T T G A C A G C T G C T A C T G A C T G A G A C T A C T G T A C G A C T G G T A C A C G T A C G T A C G T
T C G A C T A G G T A C C T A G G T A C G A C T C G T A C G T A A C G T C G A T C T A G T A C G G A C T A T G C G A C T A C G T A G T C

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:6
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CTAAATGGGC
CTAATKGV--
 T G A C A G C T G C T A C T G A C T G A G A C T A C T G T A C G A C T G G T A C
A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C A C G T A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:7
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CTAAATGGGC
TTAAGTGGT-
 T G A C A G C T G C T A C T G A C T G A G A C T A C T G T A C G A C T G G T A C
G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T A C G T

MSX2/MA0708.1/Jaspar

Match Rank:8
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CTAAATGGGC
NTAATTGG--
 T G A C A G C T G C T A C T G A C T G A G A C T A C T G T A C G A C T G G T A C
A G C T C A G T T C G A C G T A A C G T C A G T C T A G A T C G A C G T A C G T

GBX1/MA0889.1/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CTAAATGGGC
GCTAATTAGN-
 A C G T T G A C A G C T G C T A C T G A C T G A G A C T A C T G T A C G A C T G G T A C
T C A G A T G C C G A T C T G A C T G A A C G T A G C T C T G A T A C G A G C T A C G T

LBX2/MA0699.1/Jaspar

Match Rank:10
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CTAAATGGGC
NNTAATTGGN-
 A C G T T G A C A G C T G C T A C T G A C T G A G A C T A C T G T A C G A C T G G T A C
A T C G G A T C G C A T T G C A T G C A A C G T A C G T C T A G T C A G A G T C A C G T